[med-svn] [Git][med-team/libssw][debian/experimental] 4 commits: routine-update: Standards-Version: 4.5.1

Fri Mar 5 11:36:29 GMT 2021


Michael R. Crusoe pushed to branch debian/experimental at Debian Med / libssw


Commits:
abd91b09 by Michael R. Crusoe at 2021-03-05T12:04:53+01:00
routine-update: Standards-Version: 4.5.1

- - - - -
ba104fc2 by Michael R. Crusoe at 2021-03-05T12:05:09+01:00
Update watch file format version to 4.

Changes-By: lintian-brush
Fixes: lintian: older-debian-watch-file-standard
See-also: https://lintian.debian.org/tags/older-debian-watch-file-standard.html

- - - - -
7338dce4 by Michael R. Crusoe at 2021-03-05T12:24:40+01:00
Bump shared object version to 1

- - - - -
9a2345c5 by Michael R. Crusoe at 2021-03-05T12:36:04+01:00
TODO: decide on keeping both libssw0 and ssw1 in the archive, or writing patches for the other libssw0 users besides vg

- - - - -


11 changed files:

- debian/changelog
- debian/control
- debian/libssw-dev.links.in
- − debian/libssw0.install.in
- + debian/libssw1.install.in
- debian/libssw0.symbols → debian/libssw1.symbols
- debian/patches/build_all_libs.patch
- debian/patches/rename_tool.patch
- debian/rules
- debian/tests/control
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -2,6 +2,11 @@ libssw (1.2.4~0git20200707~ad452ea-1) UNRELEASED; urgency=medium
 
   * Experimental build of upstream snapshot.
   * Refresh patches
+  * Standards-Version: 4.5.1 (routine-update)
+  * Update watch file format version to 4.
+  * Bump shared object version to 1
+    TODO: decide on keeping both libssw0 and ssw1 in the archive, or writing
+          patches for the other libssw0 users besides vg
 
  -- Michael R. Crusoe <crusoe at debian.org>  Fri, 05 Mar 2021 11:35:53 +0100
 


=====================================
debian/control
=====================================
@@ -12,13 +12,13 @@ Build-Depends: debhelper (>= 12~),
                zlib1g-dev,
                libsimde-dev,
                maven-repo-helper <!nojava>
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
 Vcs-Browser: https://salsa.debian.org/med-team/libssw
 Vcs-Git: https://salsa.debian.org/med-team/libssw.git
 Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
 Rules-Requires-Root: no
 
-Package: libssw0
+Package: libssw1
 Architecture: any
 Multi-Arch: same
 Section: libs
@@ -42,7 +42,7 @@ Architecture: any
 Multi-Arch: same
 Section: libdevel
 Depends: ${misc:Depends},
-         libssw0 (= ${binary:Version})
+         libssw1 (= ${binary:Version})
 Pre-Depends: ${misc:Pre-Depends}
 Provides: libssw-dev
 Description: Development headers and static libraries for libssw
@@ -69,7 +69,7 @@ Package: ssw-align
 Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends},
-         libssw0 (= ${binary:Version})
+         libssw1 (= ${binary:Version})
 Description: Smith-Waterman aligner based on libssw
  This package provides a command-line aligner based on the libssw library,
  a fast SIMD accelerated implementation of the Smith-Waterman algorithm.


=====================================
debian/libssw-dev.links.in
=====================================
@@ -1 +1 @@
-usr/lib/@DEB_HOST_MULTIARCH@/libssw.so.0 usr/lib/@DEB_HOST_MULTIARCH@/libssw.so
+usr/lib/@DEB_HOST_MULTIARCH@/libssw.so.1 usr/lib/@DEB_HOST_MULTIARCH@/libssw.so


=====================================
debian/libssw0.install.in deleted
=====================================
@@ -1 +0,0 @@
-src/libssw.so.0 usr/lib/@DEB_HOST_MULTIARCH@/


=====================================
debian/libssw1.install.in
=====================================
@@ -0,0 +1 @@
+src/libssw.so.1 usr/lib/@DEB_HOST_MULTIARCH@/


=====================================
debian/libssw0.symbols → debian/libssw1.symbols
=====================================
@@ -1,4 +1,4 @@
-libssw.so.0 libssw0 #MINVER#
+libssw.so.1 libssw1 #MINVER#
 * Build-Depends-Package: libssw-dev
  _Z16store_previous_maPjS_PiS0_S_ at Base 1.1
  _Z9add_cigarPjPiS0_jc at Base 1.1
@@ -19,15 +19,15 @@ libssw.so.0 libssw0 #MINVER#
  _ZN20StripedSmithWaterman7AlignerD1Ev at Base 1.1
  _ZN20StripedSmithWaterman7AlignerD2Ev at Base 1.1
  _ZNK20StripedSmithWaterman7Aligner13TranslateBaseEPKcRKiPa at Base 1.1
- _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentE at Base 1.1
- _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentE at Base 1.1
+ _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentEi at Base 1.2.4~0git20200707~ad452ea-1
+ _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentEi at Base 1.2.4~0git20200707~ad452ea-1
  _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_ at Base 1.1
  _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev at Base 1.1
  _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev at Base 1.1
  _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev at Base 1.1
  align_destroy at Base 1.1
+ encoded_ops at Base 1.2.4~0git20200707~ad452ea-1
  init_destroy at Base 1.1
  mark_mismatch at Base 1.1
  ssw_align at Base 1.1
  ssw_init at Base 1.1
- to_cigar_int at Base 1.1


=====================================
debian/patches/build_all_libs.patch
=====================================
@@ -11,7 +11,7 @@ Author: Sascha Steinbiss <sascha at steinbiss.name>
  LCPPOBJS = ssw_cpp.o
  PROG = ssw_test
 -LIB = libssw.so
-+SOVERS=.0
++SOVERS=.1
 +LIB = libssw.so$(SOVERS)
 +STATICLIB = libssw.a
  EXAMPLE = example_c


=====================================
debian/patches/rename_tool.patch
=====================================
@@ -10,7 +10,7 @@ Author: Sascha Steinbiss <satta at debian.org>
  LCPPOBJS = ssw_cpp.o
 -PROG = ssw_test
 +PROG = ssw-align
- SOVERS=.0
+ SOVERS=.1
  LIB = libssw.so$(SOVERS)
  STATICLIB = libssw.a
 @@ -30,13 +30,14 @@


=====================================
debian/rules
=====================================
@@ -32,10 +32,10 @@ else
 endif
 
 ifneq ($(filter nojava,$(DEB_BUILD_PROFILES)),)
-override_dh_auto_install: debian/libssw0.install debian/libssw-dev.install debian/libssw-dev.links
+override_dh_auto_install: debian/libssw1.install debian/libssw-dev.install debian/libssw-dev.links
 	dh_auto_install
 else
-override_dh_auto_install: debian/libssw0.install debian/libssw-dev.install debian/libssw-dev.links debian/libssw-java.install debian/libssw-java.links
+override_dh_auto_install: debian/libssw1.install debian/libssw-dev.install debian/libssw-dev.links debian/libssw-java.install debian/libssw-java.links
 	mv src/ssw.jar src/ssw-$(DEB_VERSION_UPSTREAM).jar
 	dh_auto_install
 endif


=====================================
debian/tests/control
=====================================
@@ -1,5 +1,5 @@
 Tests: build-lib
-Depends: libssw0, libssw-dev, build-essential, zlib1g-dev
+Depends: libssw1, libssw-dev, build-essential, zlib1g-dev
 
 Tests: build-lib-java
 Depends: libssw-java, default-jdk-headless


=====================================
debian/watch
=====================================
@@ -1,2 +1,2 @@
-version=3
+version=4
 https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library/tags .*/v?(\d.*)\.(?:tgz|tbz2|txz|tar\.(?:gz|bz2|xz))



View it on GitLab: https://salsa.debian.org/med-team/libssw/-/compare/55257709e368210124a451546e8e8291a2ade5ba...9a2345c5a231bd2920699151bd318f772b34de47

-- 
View it on GitLab: https://salsa.debian.org/med-team/libssw/-/compare/55257709e368210124a451546e8e8291a2ade5ba...9a2345c5a231bd2920699151bd318f772b34de47
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