Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
c11b4eca by Andreas Tille at 2021-03-05T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,20 +1,20 @@
-Last-Update: Fri, 05 Mar 2021 01:42:04 +0000
+Last-Update: Fri, 05 Mar 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 183 | {imaging,covid-19} |
- orthanc | 93 | {covid-19,imaging,practice} |
- gdcm | 49 | {imaging-dev} |
- orthanc-wsi | 46 | {imaging,covid-19,laboratory,his,oncology,practice} |
- amide | 39 | {imaging} |
+ dcmtk | 185 | {imaging,covid-19} |
+ orthanc | 92 | {covid-19,imaging,practice} |
+ gdcm | 48 | {imaging-dev} |
+ orthanc-wsi | 45 | {covid-19,his,practice,oncology,imaging,laboratory} |
+ amide | 38 | {imaging} |
dicom3tools | 38 | {imaging} |
- dicomscope | 29 | {imaging} |
- htsjdk | 24 | {bio-dev} |
- dcm2niix | 23 | {imaging} |
+ dicomscope | 31 | {imaging} |
+ htsjdk | 23 | {bio-dev} |
nifticlib | 23 | {imaging} |
- dicomnifti | 22 | {imaging} |
- minc-tools | 20 | {imaging} |
- gdcm | 19 | {covid-19,imaging} |
+ dcm2niix | 22 | {imaging} |
+ dicomnifti | 21 | {imaging} |
+ gdcm | 19 | {imaging,covid-19} |
+ minc-tools | 19 | {imaging} |
odin | 19 | {imaging,imaging-dev} |
plastimatch | 16 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
@@ -23,104 +23,103 @@ Last-Update: Fri, 05 Mar 2021 01:42:04 +0000
pixelmed | 14 | {imaging} |
mia | 13 | {imaging} |
gdcm | 12 | {imaging-dev} |
- ngs-sdk | 12 | {bio-dev} |
openslide | 12 | {imaging} |
adun.app | 11 | {bio} |
- insighttoolkit4 | 10 | {imaging-dev} |
- king | 10 | {typesetting,imaging} |
+ ngs-sdk | 11 | {bio-dev} |
+ orthanc-webviewer | 11 | {imaging} |
+ king | 10 | {imaging,typesetting} |
nifti2dicom | 10 | {imaging} |
- orthanc-webviewer | 10 | {imaging} |
- jebl2 | 9 | {bio-dev} |
+ insighttoolkit4 | 9 | {imaging-dev} |
nifti2dicom | 9 | {imaging} |
- melting | 8 | {bio,cloud} |
+ ea-utils | 8 | {bio} |
+ jebl2 | 8 | {bio-dev} |
+ melting | 8 | {cloud,bio} |
+ ngs-sdk | 8 | {bio-dev} |
biojava-live | 7 | {bio-dev} |
dicompyler | 7 | {oncology} |
- ea-utils | 7 | {bio} |
jellyfish1 | 7 | {bio} |
lagan | 7 | {bio} |
- ngs-sdk | 7 | {bio-dev} |
- phast | 7 | {bio} |
+ obitools | 7 | {bio} |
+ stacks | 7 | {bio} |
anfo | 6 | {bio,cloud} |
- beast-mcmc | 6 | {bio,bio-phylogeny} |
bitseq | 6 | {bio} |
- embassy-domainatrix | 6 | {bio,cloud} |
- libncl | 6 | {bio} |
+ embassy-domainatrix | 6 | {cloud,bio} |
libsbml | 6 | {bio-dev} |
- obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
- stacks | 6 | {bio} |
- treeview | 6 | {bio-phylogeny,bio} |
+ phast | 6 | {bio} |
+ salmon | 6 | {covid-19,bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
arden | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
- bio-tradis | 5 | {bio,bio-dev} |
+ beast-mcmc | 5 | {bio-phylogeny,bio} |
+ bio-tradis | 5 | {bio-dev,bio} |
+ busco | 5 | {bio,covid-19} |
clonalorigin | 5 | {bio} |
+ cufflinks | 5 | {bio,cloud} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
- embassy-domalign | 5 | {cloud,bio} |
- embassy-domsearch | 5 | {bio,cloud} |
+ embassy-domalign | 5 | {bio,cloud} |
getdata | 5 | {bio} |
ghmm | 5 | {bio} |
lamarc | 5 | {bio} |
libminc | 5 | {imaging-dev} |
- librg-utils-perl | 5 | {bio} |
+ libncl | 5 | {bio} |
perm | 5 | {cloud,bio} |
phyutility | 5 | {bio,cloud} |
- prime-phylo | 5 | {cloud,bio} |
pymia | 5 | {imaging-dev} |
quorum | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
salmid | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
samblaster | 5 | {bio,covid-19} |
+ seqsero | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
- soapsnp | 5 | {bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
staden | 5 | {bio} |
tracetuner | 5 | {bio} |
tvc | 5 | {bio} |
yaha | 5 | {bio} |
- zalign | 5 | {bio,cloud} |
+ zalign | 5 | {cloud,bio} |
assemblytics | 4 | {bio} |
- blasr | 4 | {bio,bio-ngs} |
- busco | 4 | {bio,covid-19} |
- clonalframeml | 4 | {bio,covid-19} |
- cufflinks | 4 | {cloud,bio} |
- delly | 4 | {bio,covid-19} |
+ biomaj3-cli | 4 | {cloud} |
+ blasr | 4 | {bio-ngs,bio} |
+ clonalframeml | 4 | {covid-19,bio} |
+ embassy-domsearch | 4 | {bio,cloud} |
estscan | 4 | {bio} |
fsm-lite | 4 | {bio} |
gatb-core | 4 | {bio} |
hinge | 4 | {bio} |
ipig | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
+ librg-utils-perl | 4 | {bio} |
mauve-aligner | 4 | {bio} |
+ microbegps | 4 | {bio} |
ngs-sdk | 4 | {bio-dev} |
openslide | 4 | {imaging-dev} |
paraclu | 4 | {cloud,bio} |
+ piler | 4 | {bio} |
+ prime-phylo | 4 | {bio,cloud} |
proalign | 4 | {bio,bio-phylogeny} |
qcumber | 4 | {bio} |
+ rambo-k | 4 | {bio} |
rdp-alignment | 4 | {bio} |
rtax | 4 | {bio,cloud} |
- seqsero | 4 | {bio} |
soapaligner | 4 | {bio} |
+ soapsnp | 4 | {bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
surankco | 4 | {bio} |
atropos | 3 | {bio} |
- biomaj3-cli | 3 | {cloud} |
blimps | 3 | {bio} |
brig | 3 | {bio} |
canu | 3 | {bio} |
+ delly | 3 | {covid-19,bio} |
fastml | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
libpal-java | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
- mhap | 3 | {bio,bio-ngs} |
- microbegps | 3 | {bio} |
+ mhap | 3 | {bio-ngs,bio} |
orthanc-postgresql | 3 | {imaging} |
- pbdagcon | 3 | {bio} |
- piler | 3 | {bio} |
placnet | 3 | {bio} |
pscan-chip | 3 | {bio} |
- rambo-k | 3 | {bio} |
rdp-classifier | 3 | {bio} |
sga | 3 | {bio} |
sift | 3 | {bio} |
@@ -133,10 +132,11 @@ Last-Update: Fri, 05 Mar 2021 01:42:04 +0000
gifticlib | 2 | {imaging-dev} |
kmerresistance | 2 | {bio} |
logol | 2 | {bio} |
- nanosv | 2 | {covid-19,bio} |
+ nanosv | 2 | {bio,covid-19} |
nifticlib | 2 | {imaging-dev} |
orthanc-mysql | 2 | {imaging} |
- oscar | 2 | {data,practice,tools} |
+ oscar | 2 | {tools,practice,data} |
+ pbdagcon | 2 | {bio} |
plasmidseeker | 2 | {bio} |
sambamba | 2 | {bio} |
segemehl | 2 | {bio} |
@@ -144,13 +144,14 @@ Last-Update: Fri, 05 Mar 2021 01:42:04 +0000
skesa | 2 | {bio} |
spaln | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
- acedb | 1 | {cloud,bio} |
- bbmap | 1 | {bio,covid-19} |
+ acedb | 1 | {bio,cloud} |
+ bbmap | 1 | {covid-19,bio} |
bustools | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
eegdev | 1 | {imaging-dev} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
+ libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
@@ -160,10 +161,10 @@ Last-Update: Fri, 05 Mar 2021 01:42:04 +0000
orthanc-gdcm | 1 | {imaging} |
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
- pigx-rnaseq | 1 | {covid-19,bio} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
- pplacer | 1 | {bio,covid-19,bio-phylogeny} |
+ pplacer | 1 | {bio,bio-phylogeny,covid-19} |
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
@@ -172,7 +173,7 @@ Last-Update: Fri, 05 Mar 2021 01:42:04 +0000
srf | 1 | {bio-dev} |
svim | 1 | {bio} |
thesias | 1 | {covid-19,bio} |
- tophat-recondition | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {covid-19,bio} |
vtk-dicom | 1 | {imaging-dev} |
yanagiba | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
@@ -184,7 +185,7 @@ Last-Update: Fri, 05 Mar 2021 01:42:04 +0000
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {bio-dev,covid-19} |
- intake | 0 | {bio-dev,bio} |
+ intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -196,14 +197,13 @@ Last-Update: Fri, 05 Mar 2021 01:42:04 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
- libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libncl | 0 | {bio-dev} |
@@ -224,9 +224,9 @@ Last-Update: Fri, 05 Mar 2021 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {covid-19,bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
- q2-sample-classifier | 0 | {bio,bio-dev} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
+ q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
shovill | 0 | {covid-19,bio} |
@@ -234,7 +234,7 @@ Last-Update: Fri, 05 Mar 2021 01:42:04 +0000
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {covid-19,bio} |
varna | 0 | {bio} |
- vienna-rna | 0 | {bio,covid-19} |
+ vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
orthanc-python | -1 | {covid-19} |
(267 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c11b4ecad74c98cc1928d69375e0e6b77498e27d
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c11b4ecad74c98cc1928d69375e0e6b77498e27d
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