[med-svn] [Git][med-team/trinityrnaseq][master] 6 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq


Commits:
aeff22b6 by Michael R. Crusoe at 2021-03-05T13:18:59+01:00
routine-update: New upstream version

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f246d442 by Michael R. Crusoe at 2021-03-05T13:19:07+01:00
New upstream version 2.12.0+dfsg
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6b58e5a4 by Michael R. Crusoe at 2021-03-05T13:22:20+01:00
Update upstream source from tag 'upstream/2.12.0+dfsg'

Update to upstream version '2.12.0+dfsg'
with Debian dir 5410b828cd1e3e16b7038ec1edf58b92ca117efe
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b71d2425 by Michael R. Crusoe at 2021-03-05T13:22:34+01:00
routine-update: watch file standard 4

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af7d0756 by Michael R. Crusoe at 2021-03-05T14:04:56+01:00
Freshen patches

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234c2bde by Michael R. Crusoe at 2021-03-05T15:44:00+01:00
debian/tests/control: dep on libpicard-java

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30 changed files:

- Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
- Analysis/SuperTranscripts/pylib/Compact_graph_partial.py
- Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
- Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
- Analysis/SuperTranscripts/pylib/TGraph.py
- Analysis/SuperTranscripts/pylib/TNode.py
- Analysis/SuperTranscripts/pylib/Topological_sort.py
- − Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_partial.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_pruner.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_whole.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/DP_matrix.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Gene_splice_modeler.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/GraphCycleException.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Node_alignment.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Node_path.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Splice_model_refiner.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/TGLOBALS.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/TGraph.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/TNode.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Topological_sort.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Trinity_fasta_parser.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Trinity_util.cpython-36.pyc
- Changelog.txt
- Docker/Dockerfile
- Docker/VERSION.txt
- Trinity
- + WDL/Dockerfile
- + WDL/build.sh
- + WDL/minimap2/Dockerfile
- + WDL/minimap2/build.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/176252695911401cdf78513c2aaebfba2bf6578a...234c2bdeb9780ce7fdbc83f13ce782ce296f820e

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/176252695911401cdf78513c2aaebfba2bf6578a...234c2bdeb9780ce7fdbc83f13ce782ce296f820e
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