[med-svn] [Git][med-team/trinityrnaseq][upstream] New upstream version 2.12.0+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / trinityrnaseq


Commits:
f246d442 by Michael R. Crusoe at 2021-03-05T13:19:07+01:00
New upstream version 2.12.0+dfsg
- - - - -


30 changed files:

- Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
- Analysis/SuperTranscripts/pylib/Compact_graph_partial.py
- Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
- Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
- Analysis/SuperTranscripts/pylib/TGraph.py
- Analysis/SuperTranscripts/pylib/TNode.py
- Analysis/SuperTranscripts/pylib/Topological_sort.py
- − Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_partial.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_pruner.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_whole.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/DP_matrix.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Gene_splice_modeler.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/GraphCycleException.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Node_alignment.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Node_path.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Splice_model_refiner.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/TGLOBALS.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/TGraph.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/TNode.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Topological_sort.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Trinity_fasta_parser.cpython-36.pyc
- − Analysis/SuperTranscripts/pylib/__pycache__/Trinity_util.cpython-36.pyc
- Changelog.txt
- Docker/Dockerfile
- Docker/VERSION.txt
- Trinity
- + WDL/Dockerfile
- + WDL/build.sh
- + WDL/minimap2/Dockerfile
- + WDL/minimap2/build.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/f246d442f0ed5d24d274e6ba5975302cff9380d0

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