Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
1a21a60c by Andreas Tille at 2021-03-16T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,50 +1,50 @@
-Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
+Last-Update: Tue, 16 Mar 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 199 | {imaging,covid-19} |
- orthanc | 94 | {covid-19,imaging,practice} |
+ dcmtk | 197 | {imaging,covid-19} |
+ orthanc | 95 | {covid-19,imaging,practice} |
orthanc-wsi | 48 | {covid-19,his,practice,oncology,imaging,laboratory} |
- gdcm | 44 | {imaging-dev} |
- amide | 40 | {imaging} |
- dicomscope | 39 | {imaging} |
- dicom3tools | 38 | {imaging} |
- nifticlib | 24 | {imaging} |
- dcm2niix | 23 | {imaging} |
+ gdcm | 42 | {imaging-dev} |
+ amide | 38 | {imaging} |
+ dicom3tools | 37 | {imaging} |
+ dicomscope | 37 | {imaging} |
+ openslide | 24 | {imaging} |
htsjdk | 22 | {bio-dev} |
- odin | 20 | {imaging,imaging-dev} |
- dicomnifti | 19 | {imaging} |
- gdcm | 19 | {imaging,covid-19} |
+ nifticlib | 22 | {imaging} |
+ dcm2niix | 21 | {imaging} |
+ odin | 19 | {imaging,imaging-dev} |
gnumed-server | 18 | {covid-19,practice} |
- minc-tools | 18 | {imaging} |
- invesalius | 16 | {imaging} |
- openslide | 16 | {imaging} |
- pixelmed | 15 | {imaging} |
- plastimatch | 15 | {imaging} |
- vtk-dicom | 15 | {imaging} |
- mia | 13 | {imaging} |
- gdcm | 12 | {imaging-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
+ dicomnifti | 17 | {imaging} |
+ gdcm | 17 | {imaging,covid-19} |
+ minc-tools | 16 | {imaging} |
+ invesalius | 15 | {imaging} |
+ gdcm | 14 | {imaging-dev} |
+ pixelmed | 14 | {imaging} |
+ plastimatch | 13 | {imaging} |
+ vtk-dicom | 13 | {imaging} |
adun.app | 11 | {bio} |
- nifti2dicom | 11 | {imaging} |
+ insighttoolkit4 | 11 | {imaging-dev} |
+ mia | 11 | {imaging} |
nifti2dicom | 10 | {imaging} |
orthanc-webviewer | 10 | {imaging} |
- king | 9 | {imaging,typesetting} |
ngs-sdk | 9 | {bio-dev} |
+ nifti2dicom | 9 | {imaging} |
jebl2 | 8 | {bio-dev} |
melting | 8 | {cloud,bio} |
+ obitools | 8 | {bio} |
+ stacks | 8 | {bio} |
biojava-live | 7 | {bio-dev} |
- dicompyler | 7 | {oncology} |
ea-utils | 7 | {bio} |
jellyfish1 | 7 | {bio} |
+ king | 7 | {imaging,typesetting} |
lagan | 7 | {bio} |
- obitools | 7 | {bio} |
- stacks | 7 | {bio} |
+ bamkit | 6 | {covid-19,bio} |
bitseq | 6 | {bio} |
+ dicompyler | 6 | {oncology} |
embassy-domainatrix | 6 | {cloud,bio} |
- libminc | 6 | {imaging-dev} |
+ ghmm | 6 | {bio} |
librg-utils-perl | 6 | {bio} |
- libsbml | 6 | {bio-dev} |
ngs-sdk | 6 | {bio-dev} |
phast | 6 | {bio} |
rambo-k | 6 | {bio} |
@@ -53,18 +53,19 @@ Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
treeview | 6 | {bio,bio-phylogeny} |
anfo | 5 | {bio,cloud} |
arden | 5 | {bio,cloud} |
- bamkit | 5 | {covid-19,bio} |
bart-view | 5 | {imaging} |
beast-mcmc | 5 | {bio-phylogeny,bio} |
+ biomaj3-cli | 5 | {cloud} |
bio-tradis | 5 | {bio-dev,bio} |
busco | 5 | {bio,covid-19} |
clonalorigin | 5 | {bio} |
cufflinks | 5 | {bio,cloud} |
ecopcr | 5 | {bio} |
embassy-domalign | 5 | {bio,cloud} |
- ghmm | 5 | {bio} |
lamarc | 5 | {bio} |
+ libminc | 5 | {imaging-dev} |
libncl | 5 | {bio} |
+ libsbml | 5 | {bio-dev} |
perm | 5 | {cloud,bio} |
phyutility | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
@@ -73,13 +74,11 @@ Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
- staden | 5 | {bio} |
tracetuner | 5 | {bio} |
tvc | 5 | {bio} |
yaha | 5 | {bio} |
zalign | 5 | {cloud,bio} |
assemblytics | 4 | {bio} |
- biomaj3-cli | 4 | {cloud} |
blasr | 4 | {bio-ngs,bio} |
clonalframeml | 4 | {covid-19,bio} |
embassy-domsearch | 4 | {bio,cloud} |
@@ -91,7 +90,6 @@ Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
jmodeltest | 4 | {bio,bio-phylogeny} |
mauve-aligner | 4 | {bio} |
microbegps | 4 | {bio} |
- openslide | 4 | {imaging-dev} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
paraclu | 4 | {cloud,bio} |
piler | 4 | {bio} |
@@ -104,6 +102,7 @@ Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
spread-phy | 4 | {bio,bio-phylogeny} |
+ staden | 4 | {bio} |
surankco | 4 | {bio} |
atropos | 3 | {bio} |
blimps | 3 | {bio} |
@@ -118,10 +117,13 @@ Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
librdp-taxonomy-tree-java | 3 | {bio-dev} |
mhap | 3 | {bio-ngs,bio} |
nifticlib | 3 | {imaging-dev} |
+ openslide | 3 | {imaging-dev} |
orthanc-postgresql | 3 | {imaging} |
+ pbdagcon | 3 | {bio} |
placnet | 3 | {bio} |
pscan-chip | 3 | {bio} |
rdp-classifier | 3 | {bio} |
+ segemehl | 3 | {bio} |
sga | 3 | {bio} |
sift | 3 | {bio} |
spaced | 3 | {bio} |
@@ -136,19 +138,16 @@ Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
ngs-sdk | 2 | {bio-dev} |
orthanc-mysql | 2 | {imaging} |
oscar | 2 | {tools,practice,data} |
- pbdagcon | 2 | {bio} |
plasmidid | 2 | {covid-19,bio} |
plasmidseeker | 2 | {bio} |
sambamba | 2 | {bio} |
- segemehl | 2 | {bio} |
skesa | 2 | {bio} |
spaln | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
acedb | 1 | {bio,cloud} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {covid-19,bio} |
- ctn | 1 | {imaging-dev} |
- eegdev | 1 | {imaging-dev} |
+ dextractor | 1 | {bio,covid-19} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
@@ -157,7 +156,6 @@ Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
libvistaio | 1 | {imaging-dev} |
metaphlan2 | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
- opencfu | 1 | {laboratory} |
orthanc-gdcm | 1 | {imaging} |
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
@@ -168,20 +166,22 @@ Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
+ shovill | 1 | {covid-19,bio} |
simrisc | 1 | {oncology} |
skewer | 1 | {bio} |
srf | 1 | {bio-dev} |
svim | 1 | {bio} |
thesias | 1 | {covid-19,bio} |
tophat-recondition | 1 | {covid-19,bio} |
- vtk-dicom | 1 | {imaging-dev} |
+ varna | 1 | {bio} |
yanagiba | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
- dextractor | 0 | {bio,covid-19} |
+ ctn | 0 | {imaging-dev} |
+ eegdev | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {bio-dev,covid-19} |
@@ -219,6 +219,7 @@ Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
nifticlib | 0 | {imaging-dev} |
+ opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
@@ -228,12 +229,11 @@ Last-Update: Tue, 16 Mar 2021 01:42:03 +0000
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
- shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {covid-19,bio} |
- varna | 0 | {bio} |
vienna-rna | 0 | {covid-19,bio} |
+ vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
orthanc-python | -1 | {covid-19} |
(266 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1a21a60c4ace4737c9d7473bfcb141d4718e9c0a
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1a21a60c4ace4737c9d7473bfcb141d4718e9c0a
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