[med-svn] [Git][med-team/ncbi-entrez-direct][master] ncbi-entrez-direct 14.6.20210224+dfsg-3: Deprecate eblast too.

[Aaron M. Ucko]

Aaron M. Ucko pushed to branch master at Debian Med / ncbi-entrez-direct


Commits:
a9365ddb by Aaron M. Ucko at 2021-03-13T22:24:08-05:00
ncbi-entrez-direct 14.6.20210224+dfsg-3: Deprecate eblast too.

* debian/man/eblast.1: Extend deprecation notice to eblast.
* debian/man/protein-neighbors.1: Note that eblast is now deprecated too.

- - - - -


3 changed files:

- debian/changelog
- debian/man/eblast.1
- debian/man/protein-neighbors.1


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+ncbi-entrez-direct (14.6.20210224+dfsg-3) unstable; urgency=medium
+
+  * debian/man/eblast.1: Extend deprecation notice to eblast.
+  * debian/man/protein-neighbors.1: Note that eblast is now deprecated too.
+
+ -- Aaron M. Ucko <ucko at debian.org>  Sat, 13 Mar 2021 22:24:07 -0500
+
 ncbi-entrez-direct (14.6.20210224+dfsg-2) unstable; urgency=medium
 
   * debian/{examples,install,rules}: Relegate obsolescent short-lived


=====================================
debian/man/eblast.1
=====================================
@@ -1,9 +1,13 @@
-.TH EBLAST 1 2018-11-18 NCBI "NCBI Entrez Direct User's Manual"
+.TH EBLAST 1 2021-03-13 NCBI "NCBI Entrez Direct User's Manual"
 .SH NAME
-eblast \- perform a remote NCBI BLAST protein query
+eblast \- perform a remote NCBI BLAST protein query (DEPRECATED)
 .SH SYNOPSIS
 \fBeblast\fP (\fBedirect\ \-blast\fP)
 .SH DESCRIPTION
+\fBNote:\fP \fBeblast\fP will not appear
+in future releases of NCBI Entrez Direct.
+Instead, please use \fBblastp \-remote \-db nr \-outfmt 5 \-query \-\fP.
+
 \fBeblast\fP reads one or more FASTA\-formatted protein sequences
 from standard input
 and performs an online search for similar sequences


=====================================
debian/man/protein-neighbors.1
=====================================
@@ -1,12 +1,12 @@
-.TH PROTEIN-NEIGHBORS 1 2021-03-07 NCBI "NCBI Entrez Direct User's Manual"
+.TH PROTEIN-NEIGHBORS 1 2021-03-21 NCBI "NCBI Entrez Direct User's Manual"
 .SH NAME
 protein\-neighbors \- find similar protein accessions, via BLAST (DEPRECATED)
 .SH SYNOPSIS
 \fBprotein\-neighbors\fP
 .SH DESCRIPTION
-\fBNote:\fP \fBprotein\-neighbors\fP will not appear
-in future releases of NCBI Entrez Direct.
-However, the key \fBeblast\fP script remains available for now.
+\fBNote:\fP Neither \fBprotein\-neighbors\fP
+nor the underlying \fBeblast\fP script
+will appear in future releases of NCBI Entrez Direct.
 
 \fBprotein\-neighbors\fP reads one or more protein accessions
 from standard input



View it on GitLab: https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/a9365ddb00e7f85577b3eff3dcc970f09b5a4a2f

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