[med-svn] [Git][med-team/snpeff][master] 8 commits: Replacing the build timestamp using SOURCE_DATE_EPOCH to enhance build reproducibility

[Pierre Gruet]

Pierre Gruet pushed to branch master at Debian Med / snpeff


Commits:
c925d808 by Pierre Gruet at 2021-02-27T07:20:24+01:00
Replacing the build timestamp using SOURCE_DATE_EPOCH to enhance build reproducibility

- - - - -
d8c64251 by Pierre Gruet at 2021-03-17T18:12:38+01:00
Refreshing d/copyright and preparing to use a stripped orig tarball

- - - - -
71013c7e by Pierre Gruet at 2021-03-17T18:13:41+01:00
Using Fastq* classes from biojava4-live

- - - - -
d19d6e58 by Pierre Gruet at 2021-03-17T18:19:06+01:00
Adding myself to uploaders, using my debian.org email address

- - - - -
f2e6979a by Pierre Gruet at 2021-03-17T18:19:47+01:00
Updating changelog

- - - - -
56f72acc by Pierre Gruet at 2021-03-17T18:20:35+01:00
New upstream version 4.3t+dfsg1
- - - - -
33f0820d by Pierre Gruet at 2021-03-17T18:22:19+01:00
Update upstream source from tag 'upstream/4.3t+dfsg1'

Update to upstream version '4.3t+dfsg1'
with Debian dir 62c1ea37e67e89607fb224fe17a37716ff9f2b54
- - - - -
82b96a41 by Pierre Gruet at 2021-03-17T21:06:39+01:00
Adding a lintian override linked to embedded jquery

- - - - -


30 changed files:

- debian/README.Debian
- debian/changelog
- debian/control
- debian/copyright
- + debian/libsnpeff-java-doc.lintian-overrides
- debian/manpages/snpEff.1
- debian/patches/adapting_to_htsjdk.patch
- debian/patches/adding_scala_in_pom.patch
- debian/patches/alter_pom_for_debian_packaging.patch
- debian/patches/depending_on_biojava4.patch
- debian/patches/fix_tests.patch
- debian/patches/replacing_akka_with_java_util_concurrent.patch
- debian/patches/series
- debian/patches/update_launching_script_and_config_file_for_Debian.patch
- + debian/patches/use_fastq_from_biojava4.patch
- debian/rules
- debian/watch
- − examples/1kg.head_chr1.filtered.vcf.gz
- − examples/1kg.head_chr1.vcf.gz
- − examples/cancer.ann.vcf
- − examples/cancer.eff.vcf
- − examples/cancer.vcf
- − examples/cancer_pedigree.ann.vcf
- − examples/cancer_pedigree.vcf
- − examples/example_motif.vcf
- − examples/examples.sh
- − examples/file.vcf
- − examples/intervals.bed
- − examples/my_annotations.bed
- − examples/samples_cancer.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/6d58a59db0033e540479082abb5fbcafc3fdaf54...82b96a414a3841e333d77626378f9cd5e6c44221

-- 
View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/6d58a59db0033e540479082abb5fbcafc3fdaf54...82b96a414a3841e333d77626378f9cd5e6c44221
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210317/8a2bec96/attachment.htm>