Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
1786692e by Andreas Tille at 2021-03-23T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,134 +1,130 @@
-Last-Update: Tue, 23 Mar 2021 01:42:04 +0000
+Last-Update: Tue, 23 Mar 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 202 | {imaging,covid-19} |
- orthanc | 94 | {covid-19,imaging,practice} |
+ dcmtk | 203 | {imaging,covid-19} |
+ orthanc | 93 | {covid-19,imaging,practice} |
orthanc-wsi | 48 | {covid-19,his,practice,oncology,imaging,laboratory} |
- gdcm | 40 | {imaging-dev} |
- amide | 35 | {imaging} |
- dicom3tools | 33 | {imaging} |
+ gdcm | 38 | {imaging-dev} |
+ amide | 36 | {imaging} |
+ dicom3tools | 31 | {imaging} |
dicomscope | 31 | {imaging} |
- openslide | 26 | {imaging} |
- htsjdk | 21 | {bio-dev} |
- dcm2niix | 20 | {imaging} |
- gdcm | 20 | {imaging,covid-19} |
- nifticlib | 20 | {imaging} |
+ openslide | 29 | {imaging} |
+ dcm2niix | 21 | {imaging} |
+ htsjdk | 20 | {bio-dev} |
+ gdcm | 19 | {imaging,covid-19} |
odin | 19 | {imaging,imaging-dev} |
+ nifticlib | 18 | {imaging} |
gnumed-server | 17 | {covid-19,practice} |
dicomnifti | 16 | {imaging} |
- insighttoolkit4 | 14 | {imaging-dev} |
- invesalius | 14 | {imaging} |
- minc-tools | 14 | {imaging} |
- pixelmed | 14 | {imaging} |
+ invesalius | 15 | {imaging} |
vtk-dicom | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
+ insighttoolkit4 | 13 | {imaging-dev} |
+ minc-tools | 13 | {imaging} |
+ pixelmed | 13 | {imaging} |
plastimatch | 12 | {imaging} |
- mia | 11 | {imaging} |
adun.app | 10 | {bio} |
+ mia | 10 | {imaging} |
ngs-sdk | 10 | {bio-dev} |
+ nifti2dicom | 10 | {imaging} |
orthanc-webviewer | 10 | {imaging} |
- nifti2dicom | 8 | {imaging} |
- obitools | 8 | {bio} |
+ nifti2dicom | 9 | {imaging} |
+ bamkit | 7 | {covid-19,bio} |
libminc | 7 | {imaging-dev} |
- nifti2dicom | 7 | {imaging} |
- stacks | 7 | {bio} |
- bamkit | 6 | {covid-19,bio} |
+ melting | 7 | {cloud,bio} |
cufflinks | 6 | {bio,cloud} |
- ea-utils | 6 | {bio} |
- jebl2 | 6 | {bio-dev} |
+ dicompyler | 6 | {oncology} |
king | 6 | {imaging,typesetting} |
- lagan | 6 | {bio} |
- melting | 6 | {cloud,bio} |
+ obitools | 6 | {bio} |
salmon | 6 | {covid-19,bio} |
+ stacks | 6 | {bio} |
bart-view | 5 | {imaging} |
- biojava-live | 5 | {bio-dev} |
- dicompyler | 5 | {oncology} |
- jellyfish1 | 5 | {bio} |
+ ea-utils | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
openslide | 5 | {imaging-dev} |
rambo-k | 5 | {bio} |
salmid | 5 | {bio} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- biomaj3-cli | 4 | {cloud} |
- bio-tradis | 4 | {bio-dev,bio} |
- bitseq | 4 | {bio} |
+ treeview | 5 | {bio,bio-phylogeny} |
busco | 4 | {bio,covid-19} |
- clonalorigin | 4 | {bio} |
- ecopcr | 4 | {bio} |
- embassy-domainatrix | 4 | {cloud,bio} |
- estscan | 4 | {bio} |
- ghmm | 4 | {bio} |
- libncl | 4 | {bio} |
+ elastix | 4 | {imaging} |
+ jebl2 | 4 | {bio-dev} |
+ lagan | 4 | {bio} |
ngs-sdk | 4 | {bio-dev} |
nifticlib | 4 | {imaging-dev} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
- phast | 4 | {bio} |
pymia | 4 | {imaging-dev} |
- rdp-alignment | 4 | {bio} |
sight | 4 | {imaging} |
- tracetuner | 4 | {bio} |
- treeview | 4 | {bio,bio-phylogeny} |
- tvc | 4 | {bio} |
- anfo | 3 | {bio,cloud} |
- arden | 3 | {bio,cloud} |
- assemblytics | 3 | {bio} |
- blasr | 3 | {bio-ngs,bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ biojava-live | 3 | {bio-dev} |
+ biomaj3-cli | 3 | {cloud} |
blimps | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
- elastix | 3 | {imaging} |
- embassy-domalign | 3 | {bio,cloud} |
- fsm-lite | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
- libpal-java | 3 | {bio-dev} |
- libsbml | 3 | {bio-dev} |
- mauve-aligner | 3 | {bio} |
+ estscan | 3 | {bio} |
+ getdata | 3 | {bio} |
+ ghmm | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ lamarc | 3 | {bio} |
microbegps | 3 | {bio} |
orthanc-postgresql | 3 | {imaging} |
oscar | 3 | {tools,practice,data} |
- perm | 3 | {cloud,bio} |
+ pbdagcon | 3 | {bio} |
phyutility | 3 | {bio,cloud} |
piler | 3 | {bio} |
- qcumber | 3 | {bio} |
- quorum | 3 | {bio} |
- samblaster | 3 | {bio,covid-19} |
+ rdp-alignment | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
+ saint | 3 | {bio} |
sibsim4 | 3 | {bio,cloud} |
sift | 3 | {bio} |
spread-phy | 3 | {bio,bio-phylogeny} |
suitename | 3 | {bio} |
- surankco | 3 | {bio} |
- yaha | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
+ tracetuner | 3 | {bio} |
+ anfo | 2 | {bio,cloud} |
+ arden | 2 | {bio,cloud} |
+ assemblytics | 2 | {bio} |
atropos | 2 | {bio} |
+ bio-tradis | 2 | {bio-dev,bio} |
+ bitseq | 2 | {bio} |
+ blasr | 2 | {bio-ngs,bio} |
brig | 2 | {bio} |
canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
+ clonalorigin | 2 | {bio} |
delly | 2 | {covid-19,bio} |
+ ecopcr | 2 | {bio} |
+ embassy-domainatrix | 2 | {cloud,bio} |
+ embassy-domalign | 2 | {bio,cloud} |
embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
+ fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
- getdata | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
hinge | 2 | {bio} |
ipig | 2 | {bio} |
- lamarc | 2 | {bio} |
+ jmodeltest | 2 | {bio,bio-phylogeny} |
libdivsufsort | 2 | {bio-dev} |
+ libncl | 2 | {bio} |
+ libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ libsbml | 2 | {bio-dev} |
logol | 2 | {bio} |
+ mauve-aligner | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
paraclu | 2 | {cloud,bio} |
- pbdagcon | 2 | {bio} |
+ perm | 2 | {cloud,bio} |
+ phast | 2 | {bio} |
placnet | 2 | {bio} |
plasmidid | 2 | {covid-19,bio} |
plasmidseeker | 2 | {bio} |
prime-phylo | 2 | {bio,cloud} |
proalign | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
+ qcumber | 2 | {bio} |
+ quorum | 2 | {bio} |
rdp-classifier | 2 | {bio} |
rtax | 2 | {bio,cloud} |
- runcircos-gui | 2 | {bio} |
- saint | 2 | {bio} |
sambamba | 2 | {bio} |
+ samblaster | 2 | {bio,covid-19} |
segemehl | 2 | {bio} |
seq-gen | 2 | {bio} |
sga | 2 | {bio} |
@@ -137,13 +133,18 @@ Last-Update: Tue, 23 Mar 2021 01:42:04 +0000
spaced | 2 | {bio} |
sprai | 2 | {bio} |
staden | 2 | {bio} |
+ surankco | 2 | {bio} |
trace2dbest | 2 | {bio} |
+ tvc | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
+ yaha | 2 | {bio} |
+ zalign | 2 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {covid-19,bio} |
dextractor | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
htscodecs | 1 | {bio-dev,covid-19} |
+ intake | 1 | {bio,bio-dev} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
@@ -154,7 +155,6 @@ Last-Update: Tue, 23 Mar 2021 01:42:04 +0000
ncbi-vdb | 1 | {bio-dev} |
orthanc-gdcm | 1 | {imaging} |
orthanc-mysql | 1 | {imaging} |
- papyrus | 1 | {imaging-dev} |
pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
@@ -170,6 +170,7 @@ Last-Update: Tue, 23 Mar 2021 01:42:04 +0000
thesias | 1 | {covid-19,bio} |
tophat-recondition | 1 | {covid-19,bio} |
varna | 1 | {bio} |
+ vienna-rna | 1 | {covid-19,bio} |
yanagiba | 1 | {covid-19,bio} |
acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
@@ -182,7 +183,6 @@ Last-Update: Tue, 23 Mar 2021 01:42:04 +0000
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
- intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -218,6 +218,7 @@ Last-Update: Tue, 23 Mar 2021 01:42:04 +0000
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
@@ -229,7 +230,6 @@ Last-Update: Tue, 23 Mar 2021 01:42:04 +0000
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
- vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1786692e1757dd0afa1b7e91d8e0ca921295d0c1
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1786692e1757dd0afa1b7e91d8e0ca921295d0c1
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