[med-svn] [Git][med-team/python-scanpy][master] 4 commits: python3-igraph is used in tests (maybe it needs to be added manually to Recommends or Suggests)

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / python-scanpy


Commits:
4784bbf6 by Andreas Tille at 2021-03-24T11:57:40+01:00
python3-igraph is used in tests (maybe it needs to be added manually to Recommends or Suggests)

- - - - -
04ec2cbd by Andreas Tille at 2021-03-24T11:57:40+01:00
Rename to python-scanpy

- - - - -
14a428e8 by Andreas Tille at 2021-03-24T11:57:40+01:00
Include data file to run test suite

- - - - -
0196b530 by Andreas Tille at 2021-03-24T11:57:40+01:00
New upstream version 1.7.1
- - - - -


6 changed files:

- debian/changelog
- debian/control
- + debian/data/get
- + debian/data/pbmc3k_raw.h5ad
- debian/rules
- + debian/source/include-binaries


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-scanpy (1.7.1-1) UNRELEASED; urgency=medium
+python-scanpy (1.7.1-1) UNRELEASED; urgency=medium
 
   * Team upload
   * Initial release (Closes: #970887)


=====================================
debian/control
=====================================
@@ -1,4 +1,4 @@
-Source: scanpy
+Source: python-scanpy
 Section: science
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -32,11 +32,13 @@ Build-Depends: debhelper-compat (= 13),
                python3-legacy-api-wrap,
                python3-pytoml,
                python3-pytest <!nocheck>,
-               python3-pytest-cov <!nocheck>
+               python3-pytest-cov <!nocheck>,
+               python3-igraph <!nocheck>,
+               python3-leidenalg <!nocheck>
 Standards-Version: 4.5.1
 Homepage: https://github.com/theislab/scanpy
-Vcs-Browser: https://salsa.debian.org/med-team/scanpy
-Vcs-Git: https://salsa.debian.org/med-team/scanpy.git
+Vcs-Browser: https://salsa.debian.org/med-team/python-scanpy
+Vcs-Git: https://salsa.debian.org/med-team/python-scanpy.git
 Testsuite: autopkgtest-pkg-python
 Rules-Requires-Root: no
 


=====================================
debian/data/get
=====================================
@@ -0,0 +1,2 @@
+#!/bin/sh
+wget -q http://falexwolf.de/data/pbmc3k_raw.h5ad


=====================================
debian/data/pbmc3k_raw.h5ad
=====================================
Binary files /dev/null and b/debian/data/pbmc3k_raw.h5ad differ


=====================================
debian/rules
=====================================
@@ -16,6 +16,7 @@ override_dh_auto_clean:
 	${RM} -rf .pybuild __pycache__ scanpy/tests/__pycache__ scanpy/__pycache__
 
 override_dh_auto_test:
+	cp -a debian/data data
 	PYBUILD_SYSTEM=custom \
 	PYBUILD_TEST_ARGS="pytest-3 -rx  --ignore=scanpy/tests/_images -cov=scanpy --cov=tests --cov=docs_src --cov-report=term-missing:skip-covered -o console_output_style=progress" \
 	dh_auto_test


=====================================
debian/source/include-binaries
=====================================
@@ -0,0 +1 @@
+debian/data/pbmc3k_raw.h5ad



View it on GitLab: https://salsa.debian.org/med-team/python-scanpy/-/compare/78277c0c77258cedb6625159702603e0d3b5f6be...0196b530892c3cebb7c492b57153a70658e51a93

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-scanpy/-/compare/78277c0c77258cedb6625159702603e0d3b5f6be...0196b530892c3cebb7c492b57153a70658e51a93
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