[med-svn] [Git][med-team/bamclipper][master] 2 commits: Fix perl interpreter

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bamclipper


Commits:
3d2fef18 by Andreas Tille at 2021-03-25T14:39:31+01:00
Fix perl interpreter

- - - - -
1ea97a2e by Andreas Tille at 2021-03-25T16:07:04+01:00
Parallel is also packaged

- - - - -


2 changed files:

- debian/control
- debian/rules


Changes:

=====================================
debian/control
=====================================
@@ -14,7 +14,8 @@ Package: bamclipper
 Architecture: all
 Depends: ${perl:Depends},
          ${misc:Depends},
-         samtools
+         samtools,
+         parallel
 Description: Remove gene-specific primer sequences from SAM/BAM alignments
  Remove gene-specific primer sequences from SAM/BAM alignments of PCR
  amplicons by soft-clipping.


=====================================
debian/rules
=====================================
@@ -1,31 +1,12 @@
 #!/usr/bin/make -f
 
 # DH_VERBOSE := 1
-export LC_ALL=C.UTF-8
-
-include /usr/share/dpkg/default.mk
-# this provides:
-# DEB_SOURCE: the source package name
-# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
-# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
-# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
-# DEB_VERSION_UPSTREAM: the package's upstream version
-# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
-# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as
-#                    specified by <https://reproducible-builds.org/specs/source-date-epoch/>
-
-# for hardening you might like to uncomment this:
-# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
 %:
 	dh $@
 
-### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected
-#override_dh_auto_test:
-#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-#	do_stuff_for_testing
-#endif
-
-### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script
-#get-orig-source:
-#	. debian/get-orig-source
+override_dh_install:
+	dh_install
+	for perlscript in `grep -lR '#!/usr/bin/env \+perl' debian/*/usr/*` ; do \
+	    sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' $${perlscript} ; \
+	done



View it on GitLab: https://salsa.debian.org/med-team/bamclipper/-/compare/b22fe50380310c6d01298a9fc2d312d47631e285...1ea97a2e1f960380e22d24ccaecb3431fe7aec2e

-- 
View it on GitLab: https://salsa.debian.org/med-team/bamclipper/-/compare/b22fe50380310c6d01298a9fc2d312d47631e285...1ea97a2e1f960380e22d24ccaecb3431fe7aec2e
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