Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
06be8e05 by Andreas Tille at 2021-03-26T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,32 +1,32 @@
-Last-Update: Fri, 26 Mar 2021 01:42:04 +0000
+Last-Update: Fri, 26 Mar 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 199 | {imaging,covid-19} |
- orthanc | 94 | {covid-19,imaging,practice} |
- orthanc-wsi | 48 | {covid-19,his,practice,oncology,imaging,laboratory} |
- gdcm | 37 | {imaging-dev} |
+ dcmtk | 204 | {imaging,covid-19} |
+ orthanc | 95 | {covid-19,practice,imaging} |
+ orthanc-wsi | 49 | {his,oncology,covid-19,imaging,practice,laboratory} |
+ gdcm | 38 | {imaging-dev} |
amide | 35 | {imaging} |
dicom3tools | 33 | {imaging} |
dicomscope | 30 | {imaging} |
openslide | 30 | {imaging} |
gdcm | 21 | {imaging,covid-19} |
- odin | 21 | {imaging,imaging-dev} |
- dcm2niix | 20 | {imaging} |
htsjdk | 20 | {bio-dev} |
+ odin | 20 | {imaging,imaging-dev} |
+ dcm2niix | 19 | {imaging} |
nifticlib | 19 | {imaging} |
dicomnifti | 17 | {imaging} |
gnumed-server | 17 | {covid-19,practice} |
invesalius | 16 | {imaging} |
+ gdcm | 15 | {imaging-dev} |
minc-tools | 15 | {imaging} |
pixelmed | 15 | {imaging} |
vtk-dicom | 15 | {imaging} |
- gdcm | 13 | {imaging-dev} |
insighttoolkit4 | 13 | {imaging-dev} |
plastimatch | 12 | {imaging} |
+ adun.app | 11 | {bio} |
mia | 11 | {imaging} |
nifti2dicom | 11 | {imaging} |
- adun.app | 10 | {bio} |
ngs-sdk | 10 | {bio-dev} |
nifti2dicom | 10 | {imaging} |
orthanc-webviewer | 10 | {imaging} |
@@ -34,8 +34,8 @@ Last-Update: Fri, 26 Mar 2021 01:42:04 +0000
bamkit | 7 | {covid-19,bio} |
king | 7 | {imaging,typesetting} |
libminc | 7 | {imaging-dev} |
- melting | 7 | {cloud,bio} |
- cufflinks | 6 | {bio,cloud} |
+ melting | 7 | {bio,cloud} |
+ cufflinks | 6 | {cloud,bio} |
obitools | 6 | {bio} |
salmon | 6 | {covid-19,bio} |
dicompyler | 5 | {oncology} |
@@ -44,8 +44,7 @@ Last-Update: Fri, 26 Mar 2021 01:42:04 +0000
openslide | 5 | {imaging-dev} |
rambo-k | 5 | {bio} |
salmid | 5 | {bio} |
- stacks | 5 | {bio} |
- treeview | 5 | {bio,bio-phylogeny} |
+ treeview | 5 | {bio-phylogeny,bio} |
bart-view | 4 | {imaging} |
busco | 4 | {bio,covid-19} |
elastix | 4 | {imaging} |
@@ -53,12 +52,12 @@ Last-Update: Fri, 26 Mar 2021 01:42:04 +0000
lagan | 4 | {bio} |
ngs-sdk | 4 | {bio-dev} |
nifticlib | 4 | {imaging-dev} |
- orthanc-dicomweb | 4 | {imaging,covid-19} |
+ orthanc-dicomweb | 4 | {covid-19,imaging} |
pymia | 4 | {imaging-dev} |
+ stacks | 4 | {bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
biojava-live | 3 | {bio-dev} |
biomaj3-cli | 3 | {cloud} |
- blimps | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
estscan | 3 | {bio} |
getdata | 3 | {bio} |
@@ -75,28 +74,28 @@ Last-Update: Fri, 26 Mar 2021 01:42:04 +0000
rdp-alignment | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
- sibsim4 | 3 | {bio,cloud} |
- sift | 3 | {bio} |
+ sibsim4 | 3 | {cloud,bio} |
sight | 3 | {imaging} |
- spread-phy | 3 | {bio,bio-phylogeny} |
+ spread-phy | 3 | {bio-phylogeny,bio} |
suitename | 3 | {bio} |
tracetuner | 3 | {bio} |
- anfo | 2 | {bio,cloud} |
+ anfo | 2 | {cloud,bio} |
arden | 2 | {bio,cloud} |
assemblytics | 2 | {bio} |
atropos | 2 | {bio} |
bio-tradis | 2 | {bio-dev,bio} |
bitseq | 2 | {bio} |
blasr | 2 | {bio-ngs,bio} |
+ blimps | 2 | {bio} |
brig | 2 | {bio} |
canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
- delly | 2 | {covid-19,bio} |
+ delly | 2 | {bio,covid-19} |
ecopcr | 2 | {bio} |
embassy-domainatrix | 2 | {cloud,bio} |
embassy-domalign | 2 | {bio,cloud} |
- embassy-domsearch | 2 | {bio,cloud} |
+ embassy-domsearch | 2 | {cloud,bio} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
@@ -114,10 +113,10 @@ Last-Update: Fri, 26 Mar 2021 01:42:04 +0000
perm | 2 | {cloud,bio} |
phast | 2 | {bio} |
placnet | 2 | {bio} |
- plasmidid | 2 | {covid-19,bio} |
+ plasmidid | 2 | {bio,covid-19} |
plasmidseeker | 2 | {bio} |
- prime-phylo | 2 | {bio,cloud} |
- proalign | 2 | {bio,bio-phylogeny} |
+ prime-phylo | 2 | {cloud,bio} |
+ proalign | 2 | {bio-phylogeny,bio} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
@@ -128,6 +127,7 @@ Last-Update: Fri, 26 Mar 2021 01:42:04 +0000
segemehl | 2 | {bio} |
seq-gen | 2 | {bio} |
sga | 2 | {bio} |
+ sift | 2 | {bio} |
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
spaced | 2 | {bio} |
@@ -136,42 +136,42 @@ Last-Update: Fri, 26 Mar 2021 01:42:04 +0000
surankco | 2 | {bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
- varscan | 2 | {bio,covid-19} |
+ varscan | 2 | {covid-19,bio} |
yaha | 2 | {bio} |
zalign | 2 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
- bustools | 1 | {covid-19,bio} |
+ bustools | 1 | {bio,covid-19} |
dextractor | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
fsm-lite | 1 | {bio} |
htscodecs | 1 | {bio-dev,covid-19} |
- intake | 1 | {bio,bio-dev} |
+ intake | 1 | {bio-dev,bio} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
metaphlan2 | 1 | {bio} |
- nanosv | 1 | {bio,covid-19} |
+ nanosv | 1 | {covid-19,bio} |
ncbi-vdb | 1 | {bio-dev} |
orthanc-gdcm | 1 | {imaging} |
orthanc-mysql | 1 | {imaging} |
pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
- pplacer | 1 | {bio,bio-phylogeny,covid-19} |
+ pplacer | 1 | {bio-phylogeny,covid-19,bio} |
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
- shovill | 1 | {covid-19,bio} |
+ shovill | 1 | {bio,covid-19} |
simrisc | 1 | {oncology} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
svim | 1 | {bio} |
- thesias | 1 | {covid-19,bio} |
- tophat-recondition | 1 | {covid-19,bio} |
+ thesias | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {bio,covid-19} |
vienna-rna | 1 | {covid-19,bio} |
- yanagiba | 1 | {covid-19,bio} |
+ yanagiba | 1 | {bio,covid-19} |
acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
@@ -198,7 +198,7 @@ Last-Update: Fri, 26 Mar 2021 01:42:04 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
@@ -224,11 +224,11 @@ Last-Update: Fri, 26 Mar 2021 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
- q2-sample-classifier | 0 | {bio-dev,bio} |
+ q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06be8e0598271f7faf8ae4e763eb840839b824f0
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06be8e0598271f7faf8ae4e763eb840839b824f0
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210326/ab55493a/attachment-0001.htm>