Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
afbb4586 by Andreas Tille at 2021-03-29T13:42:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,22 +1,22 @@
-Last-Update: Mon, 29 Mar 2021 01:42:03 +0000
+Last-Update: Mon, 29 Mar 2021 13:42:07 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 207 | {imaging,covid-19} |
orthanc | 97 | {covid-19,practice,imaging} |
- orthanc-wsi | 49 | {his,oncology,covid-19,imaging,practice,laboratory} |
+ orthanc-wsi | 49 | {his,laboratory,oncology,covid-19,imaging,practice} |
gdcm | 38 | {imaging-dev} |
amide | 35 | {imaging} |
dicom3tools | 31 | {imaging} |
dicomscope | 28 | {imaging} |
openslide | 28 | {imaging} |
htsjdk | 21 | {bio-dev} |
- odin | 20 | {imaging,imaging-dev} |
- gdcm | 18 | {imaging,covid-19} |
+ odin | 20 | {imaging-dev,imaging} |
+ gdcm | 18 | {covid-19,imaging} |
dcm2niix | 17 | {imaging} |
nifticlib | 17 | {imaging} |
dicomnifti | 16 | {imaging} |
- gnumed-server | 16 | {covid-19,practice} |
+ gnumed-server | 16 | {practice,covid-19} |
gdcm | 15 | {imaging-dev} |
invesalius | 15 | {imaging} |
minc-tools | 14 | {imaging} |
@@ -33,7 +33,7 @@ Last-Update: Mon, 29 Mar 2021 01:42:03 +0000
bamkit | 8 | {covid-19,bio} |
ngs-sdk | 8 | {bio-dev} |
king | 7 | {imaging,typesetting} |
- melting | 7 | {bio,cloud} |
+ melting | 7 | {cloud,bio} |
libminc | 6 | {imaging-dev} |
obitools | 6 | {bio} |
dicompyler | 5 | {oncology} |
@@ -44,16 +44,16 @@ Last-Update: Mon, 29 Mar 2021 01:42:03 +0000
salmon | 5 | {covid-19,bio} |
treeview | 5 | {bio-phylogeny,bio} |
bart-view | 4 | {imaging} |
- busco | 4 | {bio,covid-19} |
- cufflinks | 4 | {cloud,bio} |
+ busco | 4 | {covid-19,bio} |
+ cufflinks | 4 | {bio,cloud} |
ea-utils | 4 | {bio} |
elastix | 4 | {imaging} |
jebl2 | 4 | {bio-dev} |
lagan | 4 | {bio} |
ngs-sdk | 4 | {bio-dev} |
- orthanc-dicomweb | 4 | {covid-19,imaging} |
+ orthanc-dicomweb | 4 | {imaging,covid-19} |
pymia | 4 | {imaging-dev} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
biojava-live | 3 | {bio-dev} |
biomaj3-cli | 3 | {cloud} |
clonalframeml | 3 | {covid-19,bio} |
@@ -67,36 +67,36 @@ Last-Update: Mon, 29 Mar 2021 01:42:03 +0000
microbegps | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
orthanc-postgresql | 3 | {imaging} |
- oscar | 3 | {tools,practice,data} |
+ oscar | 3 | {data,tools,practice} |
pbdagcon | 3 | {bio} |
phyutility | 3 | {bio,cloud} |
piler | 3 | {bio} |
- plasmidid | 3 | {bio,covid-19} |
+ plasmidid | 3 | {covid-19,bio} |
rdp-alignment | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
- sibsim4 | 3 | {cloud,bio} |
- spread-phy | 3 | {bio-phylogeny,bio} |
+ sibsim4 | 3 | {bio,cloud} |
+ spread-phy | 3 | {bio,bio-phylogeny} |
stacks | 3 | {bio} |
suitename | 3 | {bio} |
tracetuner | 3 | {bio} |
anfo | 2 | {cloud,bio} |
- arden | 2 | {bio,cloud} |
+ arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
atropos | 2 | {bio} |
bio-tradis | 2 | {bio-dev,bio} |
bitseq | 2 | {bio} |
- blasr | 2 | {bio-ngs,bio} |
+ blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
brig | 2 | {bio} |
canu | 2 | {bio} |
- cat-bat | 2 | {bio,covid-19} |
+ cat-bat | 2 | {covid-19,bio} |
clonalorigin | 2 | {bio} |
delly | 2 | {bio,covid-19} |
ecopcr | 2 | {bio} |
- embassy-domainatrix | 2 | {cloud,bio} |
+ embassy-domainatrix | 2 | {bio,cloud} |
embassy-domalign | 2 | {bio,cloud} |
- embassy-domsearch | 2 | {cloud,bio} |
+ embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
@@ -109,20 +109,20 @@ Last-Update: Mon, 29 Mar 2021 01:42:03 +0000
logol | 2 | {bio} |
mauve-aligner | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
- paraclu | 2 | {cloud,bio} |
- perm | 2 | {cloud,bio} |
+ paraclu | 2 | {bio,cloud} |
+ perm | 2 | {bio,cloud} |
phast | 2 | {bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
prime-phylo | 2 | {cloud,bio} |
- proalign | 2 | {bio-phylogeny,bio} |
+ proalign | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
rdp-classifier | 2 | {bio} |
- rtax | 2 | {bio,cloud} |
+ rtax | 2 | {cloud,bio} |
sambamba | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
+ samblaster | 2 | {covid-19,bio} |
segemehl | 2 | {bio} |
seq-gen | 2 | {bio} |
sga | 2 | {bio} |
@@ -140,8 +140,8 @@ Last-Update: Mon, 29 Mar 2021 01:42:03 +0000
yaha | 2 | {bio} |
zalign | 2 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
- bustools | 1 | {bio,covid-19} |
- dextractor | 1 | {bio,covid-19} |
+ bustools | 1 | {covid-19,bio} |
+ dextractor | 1 | {covid-19,bio} |
emmax | 1 | {bio} |
fsm-lite | 1 | {bio} |
htscodecs | 1 | {bio-dev,covid-19} |
@@ -156,23 +156,23 @@ Last-Update: Mon, 29 Mar 2021 01:42:03 +0000
ncbi-vdb | 1 | {bio-dev} |
orthanc-gdcm | 1 | {imaging} |
orthanc-mysql | 1 | {imaging} |
- pigx-rnaseq | 1 | {bio,covid-19} |
+ pigx-rnaseq | 1 | {covid-19,bio} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
- pplacer | 1 | {bio-phylogeny,covid-19,bio} |
+ pplacer | 1 | {covid-19,bio-phylogeny,bio} |
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
shovill | 1 | {bio,covid-19} |
simrisc | 1 | {oncology} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
- spaln | 1 | {covid-19,bio} |
+ spaln | 1 | {bio,covid-19} |
svim | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
- tophat-recondition | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {covid-19,bio} |
vienna-rna | 1 | {covid-19,bio} |
- yanagiba | 1 | {bio,covid-19} |
- acedb | 0 | {bio,cloud} |
+ yanagiba | 1 | {covid-19,bio} |
+ acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -198,7 +198,7 @@ Last-Update: Mon, 29 Mar 2021 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
@@ -213,7 +213,7 @@ Last-Update: Mon, 29 Mar 2021 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
@@ -224,7 +224,7 @@ Last-Update: Mon, 29 Mar 2021 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
- q2-sample-classifier | 0 | {bio,bio-dev} |
+ q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
simpleitk | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/afbb458623c00dd87a096e6d3722dae84bddab9f
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/afbb458623c00dd87a096e6d3722dae84bddab9f
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