[med-svn] [Git][med-team/changeo][master] 5 commits: Remove data and extra binary, use multi-orig tarball

[Shruti Sridhar]

Shruti Sridhar pushed to branch master at Debian Med / changeo


Commits:
8c63c89c by Shruti Sridhar at 2021-03-20T22:51:30+05:30
Remove data and extra binary, use multi-orig tarball

- - - - -
3a2ed201 by Shruti Sridhar at 2021-03-20T23:03:17+05:30
New upstream version 1.0.2
- - - - -
dd5c4eeb by Shruti Sridhar at 2021-03-20T23:03:20+05:30
Update upstream source from tag 'upstream/1.0.2'

Update to upstream version '1.0.2'
with Debian dir 16f468b6a1c3060d14075a1582c32fe8907dce69
- - - - -
f89d9636 by Shruti Sridhar at 2021-03-29T22:20:29+05:30
Fix autopkgtest

- - - - -
e9564263 by Shruti Sridhar at 2021-03-29T22:22:12+05:30
Update changelog

- - - - -


9 changed files:

- debian/tests/data/IMGT_Human_IGHD.fasta → debian-tests-data/IMGT_Human_IGHD.fasta
- debian/tests/data/IMGT_Human_IGHJ.fasta → debian-tests-data/IMGT_Human_IGHJ.fasta
- debian/tests/data/IMGT_Human_IGHV.fasta → debian-tests-data/IMGT_Human_IGHV.fasta
- debian/tests/data/S43_atleast-2.fasta → debian-tests-data/S43_atleast-2.fasta
- debian/tests/data/S43_atleast-2.txz → debian-tests-data/S43_atleast-2.txz
- debian/changelog
- − debian/examples
- + debian/gbp.conf
- debian/tests/run-unit-test


Changes:

=====================================
debian/tests/data/IMGT_Human_IGHD.fasta → debian-tests-data/IMGT_Human_IGHD.fasta
=====================================


=====================================
debian/tests/data/IMGT_Human_IGHJ.fasta → debian-tests-data/IMGT_Human_IGHJ.fasta
=====================================


=====================================
debian/tests/data/IMGT_Human_IGHV.fasta → debian-tests-data/IMGT_Human_IGHV.fasta
=====================================


=====================================
debian/tests/data/S43_atleast-2.fasta → debian-tests-data/S43_atleast-2.fasta
=====================================


=====================================
debian/tests/data/S43_atleast-2.txz → debian-tests-data/S43_atleast-2.txz
=====================================


=====================================
debian/changelog
=====================================
@@ -10,7 +10,19 @@ changeo (1.0.2-1) UNRELEASED; urgency=medium
   * Add autopkgtests. Closes #970597
   * Install docs
 
- -- Shruti Sridhar <shruti.sridhar99 at gmail.com>  Fri, 19 Mar 2021 21:40:12 +0530
+  [ Nilesh Patra ]
+  * Update email
+
+  [ Shruti Sridhar ]
+  * Install example and reference data
+  * Add autopkgtests
+  * Install docs
+  * Update changelog
+  * Remove data and extra binary, use multi-orig tarball
+  * New upstream version 1.0.2
+  * Fix autopkgtest
+
+ -- Shruti Sridhar <shruti.sridhar99 at gmail.com>  Mon, 29 Mar 2021 22:20:49 +0530
 
 changeo (1.0.2-1) unstable; urgency=medium
 


=====================================
debian/examples deleted
=====================================
@@ -1 +0,0 @@
-debian/tests/data/*
\ No newline at end of file


=====================================
debian/gbp.conf
=====================================
@@ -0,0 +1,4 @@
+[DEFAULT]
+pristine-tar=True
+filter=[ '.gitignore', '.travis.yml', '.git*' ]
+component=['debian-tests-data']
\ No newline at end of file


=====================================
debian/tests/run-unit-test
=====================================
@@ -1,17 +1,19 @@
 #!/bin/bash
 set -e
 
-pkg=changeo
+pkg=stringtie
+CUR_DIR=`pwd`
 
-export LC_ALL=C.UTF-8
 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
   AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
   trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
 fi
 
-cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
+cp ${CUR_DIR}/debian-tests-data/* -a "${AUTOPKGTEST_TMP}"
 
 cd "${AUTOPKGTEST_TMP}"
+gunzip -r *
+
 
 MakeDb.py imgt -i S43_atleast-2.txz -s S43_atleast-2.fasta
 echo "025d331569cf3959735d1677ad1532d9  S43_atleast-2_db-pass.tsv" >> checksums



View it on GitLab: https://salsa.debian.org/med-team/changeo/-/compare/2e372174f9697abcf31b9780b0ee8c97247ac3c9...e95642638ac52e7c6759f45d6dd0d170bf1bb1f4

-- 
View it on GitLab: https://salsa.debian.org/med-team/changeo/-/compare/2e372174f9697abcf31b9780b0ee8c97247ac3c9...e95642638ac52e7c6759f45d6dd0d170bf1bb1f4
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