Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
40102b6e by Andreas Tille at 2021-03-30T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,58 +1,58 @@
-Last-Update: Tue, 30 Mar 2021 01:42:03 +0000
+Last-Update: Tue, 30 Mar 2021 13:42:07 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 207 | {imaging,covid-19} |
- orthanc | 97 | {covid-19,practice,imaging} |
- orthanc-wsi | 49 | {his,laboratory,oncology,covid-19,imaging,practice} |
- gdcm | 38 | {imaging-dev} |
+ dcmtk | 206 | {imaging,covid-19} |
+ orthanc | 95 | {covid-19,practice,imaging} |
+ orthanc-wsi | 47 | {his,laboratory,oncology,covid-19,imaging,practice} |
+ gdcm | 36 | {imaging-dev} |
amide | 35 | {imaging} |
- dicom3tools | 31 | {imaging} |
+ dicom3tools | 30 | {imaging} |
+ openslide | 30 | {imaging} |
dicomscope | 28 | {imaging} |
- openslide | 28 | {imaging} |
- htsjdk | 21 | {bio-dev} |
- odin | 20 | {imaging-dev,imaging} |
- gdcm | 18 | {covid-19,imaging} |
- dcm2niix | 17 | {imaging} |
+ htsjdk | 22 | {bio-dev} |
+ odin | 22 | {imaging-dev,imaging} |
+ dcm2niix | 19 | {imaging} |
+ gdcm | 19 | {covid-19,imaging} |
+ gdcm | 17 | {imaging-dev} |
+ invesalius | 17 | {imaging} |
nifticlib | 17 | {imaging} |
dicomnifti | 16 | {imaging} |
gnumed-server | 16 | {practice,covid-19} |
- gdcm | 15 | {imaging-dev} |
- invesalius | 15 | {imaging} |
- minc-tools | 14 | {imaging} |
+ minc-tools | 15 | {imaging} |
pixelmed | 14 | {imaging} |
- vtk-dicom | 14 | {imaging} |
- insighttoolkit4 | 12 | {imaging-dev} |
+ vtk-dicom | 13 | {imaging} |
+ mia | 12 | {imaging} |
+ insighttoolkit4 | 11 | {imaging-dev} |
+ orthanc-webviewer | 11 | {imaging} |
adun.app | 10 | {bio} |
- mia | 10 | {imaging} |
ngs-sdk | 10 | {bio-dev} |
- nifti2dicom | 10 | {imaging} |
- orthanc-webviewer | 10 | {imaging} |
plastimatch | 10 | {imaging} |
nifti2dicom | 9 | {imaging} |
bamkit | 8 | {covid-19,bio} |
- ngs-sdk | 8 | {bio-dev} |
- king | 7 | {imaging,typesetting} |
+ king | 8 | {imaging,typesetting} |
melting | 7 | {cloud,bio} |
+ ngs-sdk | 7 | {bio-dev} |
libminc | 6 | {imaging-dev} |
- obitools | 6 | {bio} |
+ treeview | 6 | {bio-phylogeny,bio} |
dicompyler | 5 | {oncology} |
+ jebl2 | 5 | {bio-dev} |
librg-utils-perl | 5 | {bio} |
openslide | 5 | {imaging-dev} |
- rambo-k | 5 | {bio} |
salmid | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
- treeview | 5 | {bio-phylogeny,bio} |
bart-view | 4 | {imaging} |
busco | 4 | {covid-19,bio} |
cufflinks | 4 | {bio,cloud} |
ea-utils | 4 | {bio} |
elastix | 4 | {imaging} |
- jebl2 | 4 | {bio-dev} |
lagan | 4 | {bio} |
ngs-sdk | 4 | {bio-dev} |
+ obitools | 4 | {bio} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
pymia | 4 | {imaging-dev} |
+ rambo-k | 4 | {bio} |
+ salmon | 4 | {covid-19,bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
beast-mcmc | 3 | {bio,bio-phylogeny} |
biojava-live | 3 | {bio-dev} |
biomaj3-cli | 3 | {cloud} |
@@ -60,11 +60,10 @@ Last-Update: Tue, 30 Mar 2021 01:42:03 +0000
estscan | 3 | {bio} |
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
- gifticlib | 3 | {imaging-dev} |
jellyfish1 | 3 | {bio} |
lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
- microbegps | 3 | {bio} |
+ libncl | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
orthanc-postgresql | 3 | {imaging} |
oscar | 3 | {data,tools,practice} |
@@ -76,7 +75,6 @@ Last-Update: Tue, 30 Mar 2021 01:42:03 +0000
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
sibsim4 | 3 | {bio,cloud} |
- spread-phy | 3 | {bio,bio-phylogeny} |
stacks | 3 | {bio} |
suitename | 3 | {bio} |
tracetuner | 3 | {bio} |
@@ -99,16 +97,19 @@ Last-Update: Tue, 30 Mar 2021 01:42:03 +0000
embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
+ gifticlib | 2 | {imaging-dev} |
hinge | 2 | {bio} |
+ intake | 2 | {bio-dev,bio} |
ipig | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
- libncl | 2 | {bio} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
logol | 2 | {bio} |
mauve-aligner | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
+ microbegps | 2 | {bio} |
+ orthanc-mysql | 2 | {imaging} |
paraclu | 2 | {bio,cloud} |
perm | 2 | {bio,cloud} |
phast | 2 | {bio} |
@@ -139,23 +140,22 @@ Last-Update: Tue, 30 Mar 2021 01:42:03 +0000
varscan | 2 | {covid-19,bio} |
yaha | 2 | {bio} |
zalign | 2 | {cloud,bio} |
+ acedb | 1 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {covid-19,bio} |
dextractor | 1 | {covid-19,bio} |
emmax | 1 | {bio} |
fsm-lite | 1 | {bio} |
htscodecs | 1 | {bio-dev,covid-19} |
- intake | 1 | {bio-dev,bio} |
kmerresistance | 1 | {bio} |
- libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
metaphlan2 | 1 | {bio} |
nanosv | 1 | {covid-19,bio} |
ncbi-vdb | 1 | {bio-dev} |
+ opencfu | 1 | {laboratory} |
orthanc-gdcm | 1 | {imaging} |
- orthanc-mysql | 1 | {imaging} |
pigx-rnaseq | 1 | {covid-19,bio} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
@@ -163,7 +163,7 @@ Last-Update: Tue, 30 Mar 2021 01:42:03 +0000
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
shovill | 1 | {bio,covid-19} |
- simrisc | 1 | {oncology} |
+ simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
@@ -172,7 +172,6 @@ Last-Update: Tue, 30 Mar 2021 01:42:03 +0000
tophat-recondition | 1 | {covid-19,bio} |
vienna-rna | 1 | {covid-19,bio} |
yanagiba | 1 | {covid-19,bio} |
- acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -194,6 +193,7 @@ Last-Update: Tue, 30 Mar 2021 01:42:03 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -215,19 +215,19 @@ Last-Update: Tue, 30 Mar 2021 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
nifticlib | 0 | {imaging-dev} |
- opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
simpleitk | 0 | {imaging-dev} |
+ simrisc | 0 | {oncology} |
smrtanalysis | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
varna | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/40102b6ee3044096d8924ae8b8592c660265bf3b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/40102b6ee3044096d8924ae8b8592c660265bf3b
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