Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
183ff531 by Andreas Tille at 2021-03-31T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,37 +1,37 @@
-Last-Update: Wed, 31 Mar 2021 01:42:03 +0000
+Last-Update: Wed, 31 Mar 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 206 | {imaging,covid-19} |
- orthanc | 95 | {covid-19,practice,imaging} |
- orthanc-wsi | 47 | {his,laboratory,oncology,covid-19,imaging,practice} |
- gdcm | 36 | {imaging-dev} |
- amide | 35 | {imaging} |
+ dcmtk | 209 | {covid-19,imaging} |
+ orthanc | 95 | {covid-19,imaging,practice} |
+ orthanc-wsi | 47 | {his,practice,covid-19,oncology,imaging,laboratory} |
+ gdcm | 37 | {imaging-dev} |
+ amide | 34 | {imaging} |
dicom3tools | 30 | {imaging} |
openslide | 30 | {imaging} |
- dicomscope | 28 | {imaging} |
- htsjdk | 22 | {bio-dev} |
- odin | 22 | {imaging-dev,imaging} |
- dcm2niix | 19 | {imaging} |
- gdcm | 19 | {covid-19,imaging} |
+ dicomscope | 27 | {imaging} |
+ dcm2niix | 21 | {imaging} |
+ htsjdk | 21 | {bio-dev} |
+ odin | 21 | {imaging,imaging-dev} |
+ gdcm | 20 | {covid-19,imaging} |
gdcm | 17 | {imaging-dev} |
invesalius | 17 | {imaging} |
nifticlib | 17 | {imaging} |
dicomnifti | 16 | {imaging} |
- gnumed-server | 16 | {practice,covid-19} |
- minc-tools | 15 | {imaging} |
+ gnumed-server | 16 | {covid-19,practice} |
+ minc-tools | 16 | {imaging} |
pixelmed | 14 | {imaging} |
- vtk-dicom | 13 | {imaging} |
mia | 12 | {imaging} |
+ vtk-dicom | 12 | {imaging} |
+ adun.app | 11 | {bio} |
insighttoolkit4 | 11 | {imaging-dev} |
+ ngs-sdk | 11 | {bio-dev} |
orthanc-webviewer | 11 | {imaging} |
- adun.app | 10 | {bio} |
- ngs-sdk | 10 | {bio-dev} |
plastimatch | 10 | {imaging} |
nifti2dicom | 9 | {imaging} |
- bamkit | 8 | {covid-19,bio} |
- king | 8 | {imaging,typesetting} |
- melting | 7 | {cloud,bio} |
+ bamkit | 8 | {bio,covid-19} |
+ king | 8 | {typesetting,imaging} |
+ melting | 8 | {cloud,bio} |
ngs-sdk | 7 | {bio-dev} |
libminc | 6 | {imaging-dev} |
treeview | 6 | {bio-phylogeny,bio} |
@@ -42,7 +42,7 @@ Last-Update: Wed, 31 Mar 2021 01:42:03 +0000
salmid | 5 | {bio} |
bart-view | 4 | {imaging} |
busco | 4 | {covid-19,bio} |
- cufflinks | 4 | {bio,cloud} |
+ cufflinks | 4 | {cloud,bio} |
ea-utils | 4 | {bio} |
elastix | 4 | {imaging} |
lagan | 4 | {bio} |
@@ -53,7 +53,8 @@ Last-Update: Wed, 31 Mar 2021 01:42:03 +0000
rambo-k | 4 | {bio} |
salmon | 4 | {covid-19,bio} |
spread-phy | 4 | {bio,bio-phylogeny} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
+ tracetuner | 4 | {bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
biojava-live | 3 | {bio-dev} |
biomaj3-cli | 3 | {cloud} |
clonalframeml | 3 | {covid-19,bio} |
@@ -66,23 +67,23 @@ Last-Update: Wed, 31 Mar 2021 01:42:03 +0000
libncl | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
orthanc-postgresql | 3 | {imaging} |
- oscar | 3 | {data,tools,practice} |
+ oscar | 3 | {practice,data,tools} |
pbdagcon | 3 | {bio} |
- phyutility | 3 | {bio,cloud} |
+ phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
plasmidid | 3 | {covid-19,bio} |
rdp-alignment | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
- sibsim4 | 3 | {bio,cloud} |
+ sambamba | 3 | {bio} |
+ sibsim4 | 3 | {cloud,bio} |
stacks | 3 | {bio} |
suitename | 3 | {bio} |
- tracetuner | 3 | {bio} |
anfo | 2 | {cloud,bio} |
arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
atropos | 2 | {bio} |
- bio-tradis | 2 | {bio-dev,bio} |
+ bio-tradis | 2 | {bio,bio-dev} |
bitseq | 2 | {bio} |
blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
@@ -90,10 +91,10 @@ Last-Update: Wed, 31 Mar 2021 01:42:03 +0000
canu | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
clonalorigin | 2 | {bio} |
- delly | 2 | {bio,covid-19} |
+ delly | 2 | {covid-19,bio} |
ecopcr | 2 | {bio} |
- embassy-domainatrix | 2 | {bio,cloud} |
- embassy-domalign | 2 | {bio,cloud} |
+ embassy-domainatrix | 2 | {cloud,bio} |
+ embassy-domalign | 2 | {cloud,bio} |
embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
@@ -109,26 +110,26 @@ Last-Update: Wed, 31 Mar 2021 01:42:03 +0000
mauve-aligner | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
microbegps | 2 | {bio} |
+ nipype | 2 | {imaging-dev,imaging} |
orthanc-mysql | 2 | {imaging} |
paraclu | 2 | {bio,cloud} |
- perm | 2 | {bio,cloud} |
+ perm | 2 | {cloud,bio} |
phast | 2 | {bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
- prime-phylo | 2 | {cloud,bio} |
+ prime-phylo | 2 | {bio,cloud} |
proalign | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
+ python-wdlparse | 2 | {bio-dev} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
rdp-classifier | 2 | {bio} |
rtax | 2 | {cloud,bio} |
- sambamba | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
+ samblaster | 2 | {bio,covid-19} |
segemehl | 2 | {bio} |
seq-gen | 2 | {bio} |
sga | 2 | {bio} |
sift | 2 | {bio} |
- sight | 2 | {imaging} |
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
spaced | 2 | {bio} |
@@ -137,16 +138,16 @@ Last-Update: Wed, 31 Mar 2021 01:42:03 +0000
surankco | 2 | {bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
- varscan | 2 | {covid-19,bio} |
+ varscan | 2 | {bio,covid-19} |
yaha | 2 | {bio} |
- zalign | 2 | {cloud,bio} |
+ zalign | 2 | {bio,cloud} |
acedb | 1 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
- bustools | 1 | {covid-19,bio} |
- dextractor | 1 | {covid-19,bio} |
+ bustools | 1 | {bio,covid-19} |
+ dextractor | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
fsm-lite | 1 | {bio} |
- htscodecs | 1 | {bio-dev,covid-19} |
+ htscodecs | 1 | {covid-19,bio-dev} |
kmerresistance | 1 | {bio} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
@@ -159,10 +160,11 @@ Last-Update: Wed, 31 Mar 2021 01:42:03 +0000
pigx-rnaseq | 1 | {covid-19,bio} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
- pplacer | 1 | {covid-19,bio-phylogeny,bio} |
+ pplacer | 1 | {bio-phylogeny,covid-19,bio} |
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
shovill | 1 | {bio,covid-19} |
+ sight | 1 | {imaging} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
@@ -221,9 +223,10 @@ Last-Update: Wed, 31 Mar 2021 01:42:03 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-epimodels | 0 | {epi} |
python-seqcluster | 0 | {bio} |
- q2-sample-classifier | 0 | {bio-dev,bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
+ q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
simpleitk | 0 | {imaging-dev} |
@@ -236,5 +239,5 @@ Last-Update: Wed, 31 Mar 2021 01:42:03 +0000
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
-(266 rows)
+(269 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/183ff5314b9cf14c8de6929c69ef17dcc3940491
--
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