Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a94e4a6a by Andreas Tille at 2021-05-01T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,12 +1,12 @@
-Last-Update: Sat, 01 May 2021 01:42:03 +0000
+Last-Update: Sat, 01 May 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {covid-19,imaging} |
- orthanc | 90 | {covid-19,practice,imaging} |
- orthanc-wsi | 48 | {laboratory,imaging,his,oncology,covid-19,practice} |
+ dcmtk | 177 | {covid-19,imaging} |
+ orthanc | 91 | {covid-19,practice,imaging} |
+ orthanc-wsi | 49 | {laboratory,imaging,his,oncology,covid-19,practice} |
gdcm | 46 | {imaging-dev} |
- openslide | 42 | {imaging} |
+ openslide | 40 | {imaging} |
nipype | 38 | {imaging,imaging-dev} |
amide | 33 | {imaging} |
dicom3tools | 30 | {imaging} |
@@ -14,73 +14,71 @@ Last-Update: Sat, 01 May 2021 01:42:03 +0000
htsjdk | 27 | {bio-dev} |
dcm2niix | 20 | {imaging} |
odin | 18 | {imaging-dev,imaging} |
- gdcm | 17 | {covid-19,imaging} |
gdcm | 16 | {imaging-dev} |
+ gdcm | 16 | {covid-19,imaging} |
ngs-sdk | 14 | {bio-dev} |
dicomnifti | 13 | {imaging} |
- gnumed-server | 13 | {practice,covid-19} |
invesalius | 13 | {imaging} |
minc-tools | 13 | {imaging} |
pixelmed | 13 | {imaging} |
+ gnumed-server | 12 | {practice,covid-19} |
insighttoolkit4 | 12 | {imaging-dev} |
- nifticlib | 11 | {imaging} |
- orthanc-webviewer | 11 | {imaging} |
- vtk-dicom | 11 | {imaging} |
+ nifticlib | 12 | {imaging} |
+ orthanc-webviewer | 10 | {imaging} |
plastimatch | 10 | {imaging} |
+ vtk-dicom | 10 | {imaging} |
+ mia | 9 | {imaging} |
adun.app | 8 | {bio} |
- mia | 8 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
- bamkit | 7 | {covid-19,bio} |
- ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
- treeview | 7 | {bio,bio-phylogeny} |
+ bamkit | 6 | {covid-19,bio} |
blasr | 6 | {bio-ngs,bio} |
dicompyler | 6 | {oncology} |
- embassy-domainatrix | 6 | {bio,cloud} |
libminc | 6 | {imaging-dev} |
- librg-utils-perl | 6 | {bio} |
- salmid | 6 | {bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
- ea-utils | 5 | {bio} |
+ embassy-domainatrix | 5 | {bio,cloud} |
jebl2 | 5 | {bio-dev} |
+ librg-utils-perl | 5 | {bio} |
melting | 5 | {cloud,bio} |
openslide | 5 | {imaging-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
rambo-k | 5 | {bio} |
+ salmid | 5 | {bio} |
+ salmon | 5 | {bio,covid-19} |
busco | 4 | {covid-19,bio} |
- ecopcr | 4 | {bio} |
- embassy-domsearch | 4 | {bio,cloud} |
+ ea-utils | 4 | {bio} |
king | 4 | {imaging,typesetting} |
obitools | 4 | {bio} |
- perm | 4 | {bio,cloud} |
+ orthanc-mysql | 4 | {imaging} |
plasmidid | 4 | {covid-19,bio} |
pymia | 4 | {imaging-dev} |
- salmon | 4 | {bio,covid-19} |
stacks | 4 | {bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
- biomaj3-cli | 3 | {cloud} |
- bitseq | 3 | {bio} |
+ ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
embassy-domalign | 3 | {cloud,bio} |
+ embassy-domsearch | 3 | {bio,cloud} |
getdata | 3 | {bio} |
jellyfish1 | 3 | {bio} |
- lagan | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
opencfu | 3 | {laboratory} |
orthanc-postgresql | 3 | {imaging} |
+ oscar | 3 | {data,practice,tools} |
pbdagcon | 3 | {bio} |
- phast | 3 | {bio} |
+ perm | 3 | {bio,cloud} |
saint | 3 | {bio} |
sibsim4 | 3 | {cloud,bio} |
staden | 3 | {bio} |
anfo | 2 | {bio,cloud} |
biojava-live | 2 | {bio-dev} |
+ biomaj3-cli | 2 | {cloud} |
bio-tradis | 2 | {bio,bio-dev} |
+ bitseq | 2 | {bio} |
blimps | 2 | {bio} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
- ghmm | 2 | {bio} |
- lamarc | 2 | {bio} |
+ lagan | 2 | {bio} |
libctapimkt | 2 | {practice} |
libdivsufsort | 2 | {bio-dev} |
libncl | 2 | {bio} |
@@ -88,15 +86,13 @@ Last-Update: Sat, 01 May 2021 01:42:03 +0000
libsbml | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
microbegps | 2 | {bio} |
- orthanc-mysql | 2 | {imaging} |
- oscar | 2 | {data,practice,tools} |
papyrus | 2 | {imaging-dev} |
paraclu | 2 | {bio,cloud} |
+ phast | 2 | {bio} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
prime-phylo | 2 | {cloud,bio} |
qcumber | 2 | {bio} |
- rtax | 2 | {bio,cloud} |
sift | 2 | {bio} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
@@ -115,9 +111,11 @@ Last-Update: Sat, 01 May 2021 01:42:03 +0000
emboss-explorer | 1 | {bio} |
estscan | 1 | {bio} |
fastml | 1 | {bio} |
+ ghmm | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
ipig | 1 | {bio} |
jmodeltest | 1 | {bio-phylogeny,bio} |
+ lamarc | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libmuscle | 1 | {bio-dev} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
@@ -127,13 +125,12 @@ Last-Update: Sat, 01 May 2021 01:42:03 +0000
placnet | 1 | {bio} |
proalign | 1 | {bio,bio-phylogeny} |
python-wdlparse | 1 | {bio-dev} |
- quorum | 1 | {bio} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
+ rtax | 1 | {bio,cloud} |
runcircos-gui | 1 | {bio} |
samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
- segemehl | 1 | {bio} |
sga | 1 | {bio} |
sight | 1 | {imaging} |
simpleitk | 1 | {imaging-dev} |
@@ -211,12 +208,14 @@ Last-Update: Sat, 01 May 2021 01:42:03 +0000
pscan-chip | 0 | {bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2-sample-classifier | 0 | {bio-dev,bio} |
+ quorum | 0 | {bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
+ segemehl | 0 | {bio} |
seq-gen | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
@@ -239,5 +238,5 @@ Last-Update: Sat, 01 May 2021 01:42:03 +0000
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
-(269 rows)
+(268 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a94e4a6afe3a86aa0edacd664158b16537342228
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a94e4a6afe3a86aa0edacd664158b16537342228
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