Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
db4caf73 by Andreas Tille at 2021-05-03T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,67 +1,68 @@
-Last-Update: Mon, 03 May 2021 01:42:03 +0000
+Last-Update: Mon, 03 May 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {covid-19,imaging} |
+ dcmtk | 180 | {covid-19,imaging} |
orthanc | 91 | {covid-19,practice,imaging} |
orthanc-wsi | 49 | {laboratory,imaging,his,oncology,covid-19,practice} |
- gdcm | 46 | {imaging-dev} |
- openslide | 40 | {imaging} |
- nipype | 36 | {imaging,imaging-dev} |
+ gdcm | 47 | {imaging-dev} |
+ openslide | 39 | {imaging} |
+ nipype | 34 | {imaging,imaging-dev} |
amide | 32 | {imaging} |
- dicom3tools | 30 | {imaging} |
- htsjdk | 28 | {bio-dev} |
- dicomscope | 27 | {imaging} |
+ htsjdk | 30 | {bio-dev} |
+ dicom3tools | 29 | {imaging} |
+ dicomscope | 28 | {imaging} |
dcm2niix | 20 | {imaging} |
- odin | 18 | {imaging-dev,imaging} |
- gdcm | 16 | {imaging-dev} |
+ odin | 19 | {imaging-dev,imaging} |
+ gdcm | 18 | {imaging-dev} |
+ ngs-sdk | 18 | {bio-dev} |
gdcm | 16 | {covid-19,imaging} |
- ngs-sdk | 15 | {bio-dev} |
- invesalius | 14 | {imaging} |
- dicomnifti | 13 | {imaging} |
+ invesalius | 15 | {imaging} |
gnumed-server | 13 | {practice,covid-19} |
- minc-tools | 13 | {imaging} |
- nifticlib | 13 | {imaging} |
pixelmed | 13 | {imaging} |
+ dicomnifti | 12 | {imaging} |
+ minc-tools | 12 | {imaging} |
+ nifticlib | 12 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
- orthanc-webviewer | 10 | {imaging} |
- plastimatch | 10 | {imaging} |
+ adun.app | 10 | {bio} |
vtk-dicom | 10 | {imaging} |
- adun.app | 9 | {bio} |
- mia | 9 | {imaging} |
- ngs-sdk | 8 | {bio-dev} |
+ ngs-sdk | 9 | {bio-dev} |
+ orthanc-webviewer | 9 | {imaging} |
+ plastimatch | 9 | {imaging} |
+ mia | 8 | {imaging} |
+ dicompyler | 7 | {oncology} |
nifti2dicom | 7 | {imaging} |
bamkit | 6 | {covid-19,bio} |
- blasr | 6 | {bio-ngs,bio} |
- dicompyler | 6 | {oncology} |
+ librg-utils-perl | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
+ blasr | 5 | {bio-ngs,bio} |
embassy-domainatrix | 5 | {bio,cloud} |
jebl2 | 5 | {bio-dev} |
+ king | 5 | {imaging,typesetting} |
libminc | 5 | {imaging-dev} |
- librg-utils-perl | 5 | {bio} |
melting | 5 | {cloud,bio} |
openslide | 5 | {imaging-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
rambo-k | 5 | {bio} |
salmid | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
+ staden | 5 | {bio} |
busco | 4 | {covid-19,bio} |
ea-utils | 4 | {bio} |
- king | 4 | {imaging,typesetting} |
- obitools | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
plasmidid | 4 | {covid-19,bio} |
pymia | 4 | {imaging-dev} |
stacks | 4 | {bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
embassy-domalign | 3 | {cloud,bio} |
embassy-domsearch | 3 | {bio,cloud} |
getdata | 3 | {bio} |
jellyfish1 | 3 | {bio} |
+ lagan | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
+ obitools | 3 | {bio} |
opencfu | 3 | {laboratory} |
orthanc-postgresql | 3 | {imaging} |
oscar | 3 | {data,practice,tools} |
@@ -69,16 +70,16 @@ Last-Update: Mon, 03 May 2021 01:42:03 +0000
perm | 3 | {bio,cloud} |
saint | 3 | {bio} |
sibsim4 | 3 | {cloud,bio} |
- staden | 3 | {bio} |
anfo | 2 | {bio,cloud} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
biojava-live | 2 | {bio-dev} |
biomaj3-cli | 2 | {cloud} |
bio-tradis | 2 | {bio,bio-dev} |
bitseq | 2 | {bio} |
blimps | 2 | {bio} |
+ brig | 2 | {bio} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
- lagan | 2 | {bio} |
libctapimkt | 2 | {practice} |
libdivsufsort | 2 | {bio-dev} |
libncl | 2 | {bio} |
@@ -91,6 +92,7 @@ Last-Update: Mon, 03 May 2021 01:42:03 +0000
phast | 2 | {bio} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
+ placnet | 2 | {bio} |
prime-phylo | 2 | {cloud,bio} |
qcumber | 2 | {bio} |
sift | 2 | {bio} |
@@ -103,7 +105,6 @@ Last-Update: Mon, 03 May 2021 01:42:03 +0000
acedb | 1 | {bio,cloud} |
arden | 1 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
- brig | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
@@ -123,7 +124,6 @@ Last-Update: Mon, 03 May 2021 01:42:03 +0000
mauve-aligner | 1 | {bio} |
mhap | 1 | {bio,bio-ngs} |
orthanc-gdcm | 1 | {imaging} |
- placnet | 1 | {bio} |
proalign | 1 | {bio,bio-phylogeny} |
python-wdlparse | 1 | {bio-dev} |
rdp-alignment | 1 | {bio} |
@@ -197,6 +197,7 @@ Last-Update: Mon, 03 May 2021 01:42:03 +0000
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ orthanc-python | 0 | {covid-19} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
@@ -208,8 +209,8 @@ Last-Update: Mon, 03 May 2021 01:42:03 +0000
pscan-chip | 0 | {bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio-dev,bio} |
quorum | 0 | {bio} |
resfinder-db | 0 | {bio} |
@@ -236,7 +237,6 @@ Last-Update: Mon, 03 May 2021 01:42:03 +0000
yaha | 0 | {bio} |
yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
- orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
(268 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/db4caf732c354edf3ad0dc32c530855dbbb84ae4
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/db4caf732c354edf3ad0dc32c530855dbbb84ae4
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