Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
87ca4b35 by Andreas Tille at 2021-05-05T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,64 +1,63 @@
-Last-Update: Wed, 05 May 2021 01:42:04 +0000
+Last-Update: Wed, 05 May 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 182 | {covid-19,imaging} |
+ dcmtk | 184 | {covid-19,imaging} |
orthanc | 93 | {covid-19,practice,imaging} |
+ gdcm | 50 | {imaging-dev} |
orthanc-wsi | 49 | {laboratory,imaging,his,oncology,covid-19,practice} |
- gdcm | 47 | {imaging-dev} |
- openslide | 39 | {imaging} |
- amide | 34 | {imaging} |
- nipype | 34 | {imaging,imaging-dev} |
+ openslide | 40 | {imaging} |
+ amide | 36 | {imaging} |
+ nipype | 33 | {imaging,imaging-dev} |
htsjdk | 30 | {bio-dev} |
- dicom3tools | 28 | {imaging} |
- dicomscope | 28 | {imaging} |
- dcm2niix | 20 | {imaging} |
+ dicomscope | 29 | {imaging} |
+ dicom3tools | 27 | {imaging} |
+ dcm2niix | 21 | {imaging} |
odin | 19 | {imaging-dev,imaging} |
- gdcm | 18 | {imaging-dev} |
ngs-sdk | 18 | {bio-dev} |
- gdcm | 15 | {covid-19,imaging} |
+ gdcm | 17 | {imaging-dev} |
+ gdcm | 16 | {covid-19,imaging} |
invesalius | 15 | {imaging} |
- gnumed-server | 13 | {practice,covid-19} |
- dicomnifti | 12 | {imaging} |
+ gnumed-server | 14 | {practice,covid-19} |
+ dicomnifti | 13 | {imaging} |
+ nifticlib | 13 | {imaging} |
+ pixelmed | 13 | {imaging} |
minc-tools | 12 | {imaging} |
- pixelmed | 12 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
- nifticlib | 11 | {imaging} |
orthanc-webviewer | 11 | {imaging} |
adun.app | 10 | {bio} |
ngs-sdk | 10 | {bio-dev} |
+ ngs-sdk | 9 | {bio-dev} |
plastimatch | 9 | {imaging} |
vtk-dicom | 9 | {imaging} |
mia | 8 | {imaging} |
- ngs-sdk | 8 | {bio-dev} |
+ bamkit | 7 | {covid-19,bio} |
dicompyler | 7 | {oncology} |
nifti2dicom | 7 | {imaging} |
- bamkit | 6 | {covid-19,bio} |
+ king | 6 | {imaging,typesetting} |
librg-utils-perl | 6 | {bio} |
+ openslide | 6 | {imaging-dev} |
staden | 6 | {bio} |
- treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
- blasr | 5 | {bio-ngs,bio} |
- embassy-domainatrix | 5 | {bio,cloud} |
jebl2 | 5 | {bio-dev} |
- king | 5 | {imaging,typesetting} |
libminc | 5 | {imaging-dev} |
melting | 5 | {cloud,bio} |
- openslide | 5 | {imaging-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
rambo-k | 5 | {bio} |
salmid | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
+ treeview | 5 | {bio,bio-phylogeny} |
+ blasr | 4 | {bio-ngs,bio} |
busco | 4 | {covid-19,bio} |
- ea-utils | 4 | {bio} |
+ embassy-domainatrix | 4 | {bio,cloud} |
jellyfish1 | 4 | {bio} |
- obitools | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
oscar | 4 | {data,practice,tools} |
plasmidid | 4 | {covid-19,bio} |
pymia | 4 | {imaging-dev} |
stacks | 4 | {bio} |
+ ea-utils | 3 | {bio} |
ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
embassy-domalign | 3 | {cloud,bio} |
@@ -74,21 +73,17 @@ Last-Update: Wed, 05 May 2021 01:42:04 +0000
anfo | 2 | {bio,cloud} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
biojava-live | 2 | {bio-dev} |
- bio-tradis | 2 | {bio,bio-dev} |
- bitseq | 2 | {bio} |
blimps | 2 | {bio} |
brig | 2 | {bio} |
fsm-lite | 2 | {bio} |
- gatb-core | 2 | {bio} |
libctapimkt | 2 | {practice} |
libdivsufsort | 2 | {bio-dev} |
- libncl | 2 | {bio} |
libpal-java | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
+ obitools | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
paraclu | 2 | {bio,cloud} |
- phast | 2 | {bio} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
placnet | 2 | {bio} |
@@ -98,57 +93,59 @@ Last-Update: Wed, 05 May 2021 01:42:04 +0000
sift | 2 | {bio} |
sight | 2 | {imaging} |
spaced | 2 | {bio} |
- sprai | 2 | {bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
suitename | 2 | {bio} |
tracetuner | 2 | {bio} |
acedb | 1 | {bio,cloud} |
arden | 1 | {cloud,bio} |
- atropos | 1 | {bio} |
bbmap | 1 | {covid-19,bio} |
- biomaj3-cli | 1 | {cloud} |
+ bio-tradis | 1 | {bio,bio-dev} |
+ bitseq | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
- clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {cloud,bio} |
eegdev | 1 | {imaging-dev} |
emboss-explorer | 1 | {bio} |
estscan | 1 | {bio} |
fastml | 1 | {bio} |
+ gatb-core | 1 | {bio} |
ghmm | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
ipig | 1 | {bio} |
jmodeltest | 1 | {bio-phylogeny,bio} |
lamarc | 1 | {bio} |
libmuscle | 1 | {bio-dev} |
+ libncl | 1 | {bio} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
mauve-aligner | 1 | {bio} |
mhap | 1 | {bio,bio-ngs} |
microbegps | 1 | {bio} |
orthanc-gdcm | 1 | {imaging} |
+ phast | 1 | {bio} |
proalign | 1 | {bio,bio-phylogeny} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
rtax | 1 | {bio,cloud} |
- samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
sga | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
- soapaligner | 1 | {bio} |
- tvc | 1 | {bio} |
+ sprai | 1 | {bio} |
varna | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
vtk-dicom | 1 | {imaging-dev} |
zalign | 1 | {bio,cloud} |
assemblytics | 0 | {bio} |
+ atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
+ biomaj3-cli | 0 | {cloud} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
bustools | 0 | {covid-19,bio} |
camp | 0 | {imaging-dev} |
canu | 0 | {bio} |
clonalframeml | 0 | {covid-19,bio} |
+ clonalorigin | 0 | {bio} |
delly | 0 | {covid-19,bio} |
dextractor | 0 | {bio,covid-19} |
emmax | 0 | {bio} |
@@ -216,6 +213,7 @@ Last-Update: Wed, 05 May 2021 01:42:04 +0000
quorum | 0 | {bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
+ samblaster | 0 | {bio,covid-19} |
sbmltoolbox | 0 | {bio-dev} |
segemehl | 0 | {bio} |
seq-gen | 0 | {bio} |
@@ -225,6 +223,7 @@ Last-Update: Wed, 05 May 2021 01:42:04 +0000
skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
+ soapaligner | 0 | {bio} |
soapsnp | 0 | {bio} |
spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
@@ -233,6 +232,7 @@ Last-Update: Wed, 05 May 2021 01:42:04 +0000
thesias | 0 | {bio,covid-19} |
tophat-recondition | 0 | {covid-19,bio} |
trace2dbest | 0 | {bio} |
+ tvc | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
yaha | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/87ca4b3552bec3ac66fba1bf31879f1837f407be
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/87ca4b3552bec3ac66fba1bf31879f1837f407be
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