Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
f51b1823 by Andreas Tille at 2021-05-06T13:42:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,24 +1,24 @@
-Last-Update: Thu, 06 May 2021 01:42:03 +0000
+Last-Update: Thu, 06 May 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 184 | {covid-19,imaging} |
- orthanc | 93 | {covid-19,practice,imaging} |
- gdcm | 50 | {imaging-dev} |
- orthanc-wsi | 49 | {laboratory,imaging,his,oncology,covid-19,practice} |
+ dcmtk | 185 | {covid-19,imaging} |
+ orthanc | 95 | {practice,imaging,covid-19} |
+ orthanc-wsi | 50 | {imaging,laboratory,practice,his,covid-19,oncology} |
+ gdcm | 48 | {imaging-dev} |
openslide | 40 | {imaging} |
- amide | 36 | {imaging} |
- nipype | 33 | {imaging,imaging-dev} |
- htsjdk | 30 | {bio-dev} |
- dicomscope | 29 | {imaging} |
- dicom3tools | 27 | {imaging} |
+ amide | 35 | {imaging} |
+ nipype | 32 | {imaging-dev,imaging} |
+ dicomscope | 30 | {imaging} |
+ htsjdk | 29 | {bio-dev} |
+ dicom3tools | 26 | {imaging} |
dcm2niix | 21 | {imaging} |
- odin | 19 | {imaging-dev,imaging} |
+ gdcm | 18 | {imaging-dev} |
ngs-sdk | 18 | {bio-dev} |
- gdcm | 17 | {imaging-dev} |
+ odin | 17 | {imaging-dev,imaging} |
gdcm | 16 | {covid-19,imaging} |
invesalius | 15 | {imaging} |
- gnumed-server | 14 | {practice,covid-19} |
+ gnumed-server | 14 | {covid-19,practice} |
dicomnifti | 13 | {imaging} |
nifticlib | 13 | {imaging} |
pixelmed | 13 | {imaging} |
@@ -27,82 +27,82 @@ Last-Update: Thu, 06 May 2021 01:42:03 +0000
orthanc-webviewer | 11 | {imaging} |
adun.app | 10 | {bio} |
ngs-sdk | 10 | {bio-dev} |
- ngs-sdk | 9 | {bio-dev} |
plastimatch | 9 | {imaging} |
vtk-dicom | 9 | {imaging} |
+ bamkit | 8 | {covid-19,bio} |
mia | 8 | {imaging} |
- bamkit | 7 | {covid-19,bio} |
+ ngs-sdk | 8 | {bio-dev} |
+ openslide | 8 | {imaging-dev} |
dicompyler | 7 | {oncology} |
nifti2dicom | 7 | {imaging} |
king | 6 | {imaging,typesetting} |
librg-utils-perl | 6 | {bio} |
- openslide | 6 | {imaging-dev} |
staden | 6 | {bio} |
bart-view | 5 | {imaging} |
jebl2 | 5 | {bio-dev} |
- libminc | 5 | {imaging-dev} |
- melting | 5 | {cloud,bio} |
- orthanc-dicomweb | 5 | {covid-19,imaging} |
+ melting | 5 | {bio,cloud} |
+ orthanc-dicomweb | 5 | {imaging,covid-19} |
+ plasmidid | 5 | {covid-19,bio} |
rambo-k | 5 | {bio} |
salmid | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
treeview | 5 | {bio,bio-phylogeny} |
blasr | 4 | {bio-ngs,bio} |
busco | 4 | {covid-19,bio} |
- embassy-domainatrix | 4 | {bio,cloud} |
+ embassy-domainatrix | 4 | {cloud,bio} |
jellyfish1 | 4 | {bio} |
+ libminc | 4 | {imaging-dev} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
oscar | 4 | {data,practice,tools} |
- plasmidid | 4 | {covid-19,bio} |
pymia | 4 | {imaging-dev} |
stacks | 4 | {bio} |
ea-utils | 3 | {bio} |
ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domalign | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {bio,cloud} |
embassy-domsearch | 3 | {bio,cloud} |
getdata | 3 | {bio} |
lagan | 3 | {bio} |
- nifticlib | 3 | {imaging-dev} |
opencfu | 3 | {laboratory} |
pbdagcon | 3 | {bio} |
- perm | 3 | {bio,cloud} |
+ perm | 3 | {cloud,bio} |
saint | 3 | {bio} |
sibsim4 | 3 | {cloud,bio} |
- anfo | 2 | {bio,cloud} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
+ anfo | 2 | {cloud,bio} |
+ beast-mcmc | 2 | {bio,bio-phylogeny} |
biojava-live | 2 | {bio-dev} |
blimps | 2 | {bio} |
brig | 2 | {bio} |
+ ctn | 2 | {imaging-dev} |
fsm-lite | 2 | {bio} |
libctapimkt | 2 | {practice} |
libdivsufsort | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
+ nifticlib | 2 | {imaging-dev} |
obitools | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
paraclu | 2 | {bio,cloud} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
placnet | 2 | {bio} |
- prime-phylo | 2 | {cloud,bio} |
+ prime-phylo | 2 | {bio,cloud} |
qcumber | 2 | {bio} |
runcircos-gui | 2 | {bio} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
spaced | 2 | {bio} |
- spread-phy | 2 | {bio,bio-phylogeny} |
+ spread-phy | 2 | {bio-phylogeny,bio} |
suitename | 2 | {bio} |
tracetuner | 2 | {bio} |
- acedb | 1 | {bio,cloud} |
- arden | 1 | {cloud,bio} |
- bbmap | 1 | {covid-19,bio} |
- bio-tradis | 1 | {bio,bio-dev} |
+ acedb | 1 | {cloud,bio} |
+ arden | 1 | {bio,cloud} |
+ bbmap | 1 | {bio,covid-19} |
+ bio-tradis | 1 | {bio-dev,bio} |
bitseq | 1 | {bio} |
- cat-bat | 1 | {covid-19,bio} |
- ctn | 1 | {imaging-dev} |
+ cat-bat | 1 | {bio,covid-19} |
cufflinks | 1 | {cloud,bio} |
eegdev | 1 | {imaging-dev} |
emboss-explorer | 1 | {bio} |
@@ -118,20 +118,20 @@ Last-Update: Thu, 06 May 2021 01:42:03 +0000
libncl | 1 | {bio} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
mauve-aligner | 1 | {bio} |
- mhap | 1 | {bio,bio-ngs} |
+ mhap | 1 | {bio-ngs,bio} |
microbegps | 1 | {bio} |
orthanc-gdcm | 1 | {imaging} |
phast | 1 | {bio} |
- proalign | 1 | {bio,bio-phylogeny} |
+ proalign | 1 | {bio-phylogeny,bio} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
- rtax | 1 | {bio,cloud} |
+ rtax | 1 | {cloud,bio} |
samtools-legacy | 1 | {bio-dev} |
sga | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
sprai | 1 | {bio} |
varna | 1 | {bio} |
- vienna-rna | 1 | {bio,covid-19} |
+ vienna-rna | 1 | {covid-19,bio} |
vtk-dicom | 1 | {imaging-dev} |
zalign | 1 | {bio,cloud} |
assemblytics | 0 | {bio} |
@@ -141,13 +141,13 @@ Last-Update: Thu, 06 May 2021 01:42:03 +0000
biomaj3-cli | 0 | {cloud} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
- bustools | 0 | {covid-19,bio} |
+ bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
canu | 0 | {bio} |
- clonalframeml | 0 | {covid-19,bio} |
+ clonalframeml | 0 | {bio,covid-19} |
clonalorigin | 0 | {bio} |
- delly | 0 | {covid-19,bio} |
- dextractor | 0 | {bio,covid-19} |
+ delly | 0 | {bio,covid-19} |
+ dextractor | 0 | {covid-19,bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
@@ -171,9 +171,9 @@ Last-Update: Thu, 06 May 2021 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libncl | 0 | {bio-dev} |
@@ -188,7 +188,7 @@ Last-Update: Thu, 06 May 2021 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
@@ -202,18 +202,18 @@ Last-Update: Thu, 06 May 2021 01:42:03 +0000
pilercr | 0 | {bio} |
pique | 0 | {bio} |
plasmidseeker | 0 | {bio} |
- pplacer | 0 | {bio-phylogeny,bio,covid-19} |
+ pplacer | 0 | {bio-phylogeny,covid-19,bio} |
pscan-chip | 0 | {bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
python-wdlparse | 0 | {bio-dev} |
- q2-sample-classifier | 0 | {bio-dev,bio} |
+ q2-sample-classifier | 0 | {bio,bio-dev} |
quorum | 0 | {bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
- samblaster | 0 | {bio,covid-19} |
+ samblaster | 0 | {covid-19,bio} |
sbmltoolbox | 0 | {bio-dev} |
segemehl | 0 | {bio} |
seq-gen | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f51b1823cfed689c0c239f9a1da950317dd387d0
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f51b1823cfed689c0c239f9a1da950317dd387d0
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