Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a3effde2 by Andreas Tille at 2021-05-07T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,54 +1,52 @@
-Last-Update: Fri, 07 May 2021 01:42:03 +0000
+Last-Update: Fri, 07 May 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 185 | {covid-19,imaging} |
- orthanc | 95 | {practice,imaging,covid-19} |
- orthanc-wsi | 50 | {imaging,laboratory,practice,his,covid-19,oncology} |
+ dcmtk | 186 | {covid-19,imaging} |
+ orthanc | 93 | {practice,imaging,covid-19} |
+ orthanc-wsi | 49 | {imaging,laboratory,practice,his,covid-19,oncology} |
gdcm | 48 | {imaging-dev} |
- openslide | 40 | {imaging} |
- amide | 35 | {imaging} |
- nipype | 32 | {imaging-dev,imaging} |
- dicomscope | 30 | {imaging} |
- htsjdk | 29 | {bio-dev} |
- dicom3tools | 26 | {imaging} |
- dcm2niix | 21 | {imaging} |
- gdcm | 18 | {imaging-dev} |
- ngs-sdk | 18 | {bio-dev} |
+ openslide | 39 | {imaging} |
+ amide | 34 | {imaging} |
+ nipype | 31 | {imaging-dev,imaging} |
+ dicomscope | 29 | {imaging} |
+ htsjdk | 28 | {bio-dev} |
+ dicom3tools | 25 | {imaging} |
+ dcm2niix | 20 | {imaging} |
+ gdcm | 19 | {imaging-dev} |
+ ngs-sdk | 17 | {bio-dev} |
odin | 17 | {imaging-dev,imaging} |
- gdcm | 16 | {covid-19,imaging} |
- invesalius | 15 | {imaging} |
- gnumed-server | 14 | {covid-19,practice} |
- dicomnifti | 13 | {imaging} |
- nifticlib | 13 | {imaging} |
+ gdcm | 14 | {covid-19,imaging} |
+ invesalius | 14 | {imaging} |
+ gnumed-server | 13 | {covid-19,practice} |
pixelmed | 13 | {imaging} |
- minc-tools | 12 | {imaging} |
+ dicomnifti | 12 | {imaging} |
+ nifticlib | 12 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
+ minc-tools | 11 | {imaging} |
orthanc-webviewer | 11 | {imaging} |
adun.app | 10 | {bio} |
ngs-sdk | 10 | {bio-dev} |
- plastimatch | 9 | {imaging} |
- vtk-dicom | 9 | {imaging} |
bamkit | 8 | {covid-19,bio} |
- mia | 8 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
openslide | 8 | {imaging-dev} |
- dicompyler | 7 | {oncology} |
- nifti2dicom | 7 | {imaging} |
+ plastimatch | 8 | {imaging} |
+ vtk-dicom | 8 | {imaging} |
+ mia | 7 | {imaging} |
+ dicompyler | 6 | {oncology} |
king | 6 | {imaging,typesetting} |
librg-utils-perl | 6 | {bio} |
- staden | 6 | {bio} |
+ nifti2dicom | 6 | {imaging} |
bart-view | 5 | {imaging} |
jebl2 | 5 | {bio-dev} |
melting | 5 | {bio,cloud} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
plasmidid | 5 | {covid-19,bio} |
rambo-k | 5 | {bio} |
- salmid | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
+ staden | 5 | {bio} |
treeview | 5 | {bio,bio-phylogeny} |
blasr | 4 | {bio-ngs,bio} |
- busco | 4 | {covid-19,bio} |
embassy-domainatrix | 4 | {cloud,bio} |
jellyfish1 | 4 | {bio} |
libminc | 4 | {imaging-dev} |
@@ -56,7 +54,9 @@ Last-Update: Fri, 07 May 2021 01:42:03 +0000
orthanc-postgresql | 4 | {imaging} |
oscar | 4 | {data,practice,tools} |
pymia | 4 | {imaging-dev} |
+ salmid | 4 | {bio} |
stacks | 4 | {bio} |
+ busco | 3 | {covid-19,bio} |
ea-utils | 3 | {bio} |
ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
@@ -64,7 +64,6 @@ Last-Update: Fri, 07 May 2021 01:42:03 +0000
embassy-domsearch | 3 | {bio,cloud} |
getdata | 3 | {bio} |
lagan | 3 | {bio} |
- opencfu | 3 | {laboratory} |
pbdagcon | 3 | {bio} |
perm | 3 | {cloud,bio} |
saint | 3 | {bio} |
@@ -74,16 +73,12 @@ Last-Update: Fri, 07 May 2021 01:42:03 +0000
biojava-live | 2 | {bio-dev} |
blimps | 2 | {bio} |
brig | 2 | {bio} |
- ctn | 2 | {imaging-dev} |
fsm-lite | 2 | {bio} |
- libctapimkt | 2 | {practice} |
libdivsufsort | 2 | {bio-dev} |
- libpal-java | 2 | {bio-dev} |
- libsbml | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
nifticlib | 2 | {imaging-dev} |
obitools | 2 | {bio} |
- papyrus | 2 | {imaging-dev} |
+ opencfu | 2 | {laboratory} |
paraclu | 2 | {bio,cloud} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
@@ -99,12 +94,11 @@ Last-Update: Fri, 07 May 2021 01:42:03 +0000
tracetuner | 2 | {bio} |
acedb | 1 | {cloud,bio} |
arden | 1 | {bio,cloud} |
- bbmap | 1 | {bio,covid-19} |
bio-tradis | 1 | {bio-dev,bio} |
bitseq | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
+ ctn | 1 | {imaging-dev} |
cufflinks | 1 | {cloud,bio} |
- eegdev | 1 | {imaging-dev} |
emboss-explorer | 1 | {bio} |
estscan | 1 | {bio} |
fastml | 1 | {bio} |
@@ -114,29 +108,32 @@ Last-Update: Fri, 07 May 2021 01:42:03 +0000
ipig | 1 | {bio} |
jmodeltest | 1 | {bio-phylogeny,bio} |
lamarc | 1 | {bio} |
+ libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libncl | 1 | {bio} |
+ libpal-java | 1 | {bio-dev} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
+ libsbml | 1 | {bio-dev} |
mauve-aligner | 1 | {bio} |
mhap | 1 | {bio-ngs,bio} |
microbegps | 1 | {bio} |
orthanc-gdcm | 1 | {imaging} |
+ papyrus | 1 | {imaging-dev} |
phast | 1 | {bio} |
proalign | 1 | {bio-phylogeny,bio} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
rtax | 1 | {cloud,bio} |
- samtools-legacy | 1 | {bio-dev} |
sga | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
sprai | 1 | {bio} |
varna | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
- vtk-dicom | 1 | {imaging-dev} |
zalign | 1 | {bio,cloud} |
assemblytics | 0 | {bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
+ bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biomaj3-cli | 0 | {cloud} |
biosyntax | 0 | {bio} |
@@ -148,6 +145,7 @@ Last-Update: Fri, 07 May 2021 01:42:03 +0000
clonalorigin | 0 | {bio} |
delly | 0 | {bio,covid-19} |
dextractor | 0 | {covid-19,bio} |
+ eegdev | 0 | {imaging-dev} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
@@ -214,6 +212,7 @@ Last-Update: Fri, 07 May 2021 01:42:03 +0000
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
samblaster | 0 | {covid-19,bio} |
+ samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
segemehl | 0 | {bio} |
seq-gen | 0 | {bio} |
@@ -234,6 +233,7 @@ Last-Update: Fri, 07 May 2021 01:42:03 +0000
trace2dbest | 0 | {bio} |
tvc | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
+ vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
yaha | 0 | {bio} |
yanagiba | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a3effde25f91c8faed0454fd2881dd135dbd44bf
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a3effde25f91c8faed0454fd2881dd135dbd44bf
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