Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
be59e70c by Andreas Tille at 2021-05-12T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,134 +1,116 @@
-Last-Update: Wed, 12 May 2021 01:42:03 +0000
+Last-Update: Wed, 12 May 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 185 | {covid-19,imaging} |
- orthanc | 97 | {practice,imaging,covid-19} |
- gdcm | 53 | {imaging-dev} |
+ dcmtk | 181 | {covid-19,imaging} |
+ orthanc | 98 | {practice,imaging,covid-19} |
+ gdcm | 52 | {imaging-dev} |
orthanc-wsi | 51 | {imaging,laboratory,practice,his,covid-19,oncology} |
- amide | 33 | {imaging} |
- openslide | 32 | {imaging} |
+ amide | 31 | {imaging} |
nipype | 30 | {imaging-dev,imaging} |
- dicom3tools | 26 | {imaging} |
+ dicom3tools | 27 | {imaging} |
+ openslide | 26 | {imaging} |
dicomscope | 25 | {imaging} |
- htsjdk | 24 | {bio-dev} |
- dcm2niix | 23 | {imaging} |
- gdcm | 17 | {imaging-dev} |
+ htsjdk | 23 | {bio-dev} |
+ dcm2niix | 20 | {imaging} |
+ gdcm | 18 | {imaging-dev} |
+ gdcm | 17 | {covid-19,imaging} |
gnumed-server | 17 | {covid-19,practice} |
odin | 17 | {imaging-dev,imaging} |
- gdcm | 16 | {covid-19,imaging} |
ngs-sdk | 14 | {bio-dev} |
- dicomnifti | 13 | {imaging} |
+ invesalius | 13 | {imaging} |
nifticlib | 13 | {imaging} |
+ orthanc-webviewer | 13 | {imaging} |
+ pixelmed | 13 | {imaging} |
+ dicomnifti | 12 | {imaging} |
insighttoolkit4 | 12 | {imaging-dev} |
- invesalius | 12 | {imaging} |
minc-tools | 12 | {imaging} |
- orthanc-webviewer | 12 | {imaging} |
- pixelmed | 12 | {imaging} |
- adun.app | 10 | {bio} |
- nifti2dicom | 9 | {imaging} |
+ ngs-sdk | 9 | {bio-dev} |
plastimatch | 9 | {imaging} |
+ adun.app | 8 | {bio} |
bamkit | 8 | {covid-19,bio} |
dicompyler | 8 | {oncology} |
- ngs-sdk | 8 | {bio-dev} |
openslide | 8 | {imaging-dev} |
+ vtk-dicom | 8 | {imaging} |
+ mia | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
- vtk-dicom | 7 | {imaging} |
+ nifti2dicom | 7 | {imaging} |
king | 6 | {imaging,typesetting} |
- mia | 6 | {imaging} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
- jebl2 | 5 | {bio-dev} |
libminc | 5 | {imaging-dev} |
- librg-utils-perl | 5 | {bio} |
- melting | 5 | {bio,cloud} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
salmid | 5 | {bio} |
- salmon | 5 | {bio,covid-19} |
- staden | 5 | {bio} |
- treeview | 5 | {bio,bio-phylogeny} |
bart-view | 4 | {imaging} |
- blasr | 4 | {bio-ngs,bio} |
busco | 4 | {covid-19,bio} |
+ jebl2 | 4 | {bio-dev} |
+ librg-utils-perl | 4 | {bio} |
+ melting | 4 | {bio,cloud} |
pymia | 4 | {imaging-dev} |
- rambo-k | 4 | {bio} |
- stacks | 4 | {bio} |
+ salmon | 4 | {bio,covid-19} |
+ staden | 4 | {bio} |
+ treeview | 4 | {bio,bio-phylogeny} |
+ blasr | 3 | {bio-ngs,bio} |
ea-utils | 3 | {bio} |
- ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {cloud,bio} |
getdata | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
oscar | 3 | {data,practice,tools} |
- pbdagcon | 3 | {bio} |
- perm | 3 | {cloud,bio} |
plasmidid | 3 | {covid-19,bio} |
- saint | 3 | {bio} |
- sibsim4 | 3 | {cloud,bio} |
- anfo | 2 | {cloud,bio} |
- beast-mcmc | 2 | {bio,bio-phylogeny} |
- biojava-live | 2 | {bio-dev} |
+ rambo-k | 3 | {bio} |
+ stacks | 3 | {bio} |
blimps | 2 | {bio} |
- brig | 2 | {bio} |
- embassy-domalign | 2 | {bio,cloud} |
- embassy-domsearch | 2 | {bio,cloud} |
- fsm-lite | 2 | {bio} |
+ ecopcr | 2 | {bio} |
+ embassy-domainatrix | 2 | {cloud,bio} |
+ jellyfish1 | 2 | {bio} |
lagan | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
- metaphlan2 | 2 | {bio} |
obitools | 2 | {bio} |
opencfu | 2 | {laboratory} |
orthanc-gdcm | 2 | {imaging} |
- paraclu | 2 | {bio,cloud} |
- phyutility | 2 | {cloud,bio} |
- piler | 2 | {bio} |
- placnet | 2 | {bio} |
- prime-phylo | 2 | {bio,cloud} |
+ pbdagcon | 2 | {bio} |
+ perm | 2 | {cloud,bio} |
runcircos-gui | 2 | {bio} |
+ saint | 2 | {bio} |
+ sibsim4 | 2 | {cloud,bio} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
- spaced | 2 | {bio} |
- spread-phy | 2 | {bio-phylogeny,bio} |
- suitename | 2 | {bio} |
tracetuner | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- arden | 1 | {bio,cloud} |
+ anfo | 1 | {cloud,bio} |
+ beast-mcmc | 1 | {bio,bio-phylogeny} |
+ biojava-live | 1 | {bio-dev} |
bio-tradis | 1 | {bio-dev,bio} |
bitseq | 1 | {bio} |
+ brig | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
- emboss-explorer | 1 | {bio} |
+ embassy-domalign | 1 | {bio,cloud} |
+ embassy-domsearch | 1 | {bio,cloud} |
estscan | 1 | {bio} |
- fastml | 1 | {bio} |
- gatb-core | 1 | {bio} |
+ fsm-lite | 1 | {bio} |
ghmm | 1 | {bio} |
- ipig | 1 | {bio} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
lamarc | 1 | {bio} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
- libncl | 1 | {bio} |
- libpal-java | 1 | {bio-dev} |
- librdp-taxonomy-tree-java | 1 | {bio-dev} |
libsbml | 1 | {bio-dev} |
- mauve-aligner | 1 | {bio} |
- mhap | 1 | {bio-ngs,bio} |
- microbegps | 1 | {bio} |
+ metaphlan2 | 1 | {bio} |
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
+ paraclu | 1 | {bio,cloud} |
phast | 1 | {bio} |
- proalign | 1 | {bio-phylogeny,bio} |
+ phyutility | 1 | {cloud,bio} |
+ piler | 1 | {bio} |
+ placnet | 1 | {bio} |
+ prime-phylo | 1 | {bio,cloud} |
qcumber | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
- rdp-classifier | 1 | {bio} |
- rtax | 1 | {cloud,bio} |
- sga | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
- sprai | 1 | {bio} |
+ spaced | 1 | {bio} |
+ spread-phy | 1 | {bio-phylogeny,bio} |
+ suitename | 1 | {bio} |
varna | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
- zalign | 1 | {bio,cloud} |
+ arden | 0 | {bio,cloud} |
assemblytics | 0 | {bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
@@ -146,13 +128,18 @@ Last-Update: Wed, 12 May 2021 01:42:03 +0000
delly | 0 | {bio,covid-19} |
dextractor | 0 | {covid-19,bio} |
eegdev | 0 | {imaging-dev} |
+ emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
+ fastml | 0 | {bio} |
fis-gtm | 0 | {his} |
+ gatb-core | 0 | {bio} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
hinge | 0 | {bio} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio-dev,bio} |
+ ipig | 0 | {bio} |
+ jmodeltest | 0 | {bio-phylogeny,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -175,18 +162,24 @@ Last-Update: Wed, 12 May 2021 01:42:03 +0000
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
+ libncl | 0 | {bio} |
libncl | 0 | {bio-dev} |
+ libpal-java | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
+ librdp-taxonomy-tree-java | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libvistaio | 0 | {imaging-dev} |
libxdf | 0 | {imaging-dev} |
logol | 0 | {bio} |
+ mauve-aligner | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
+ mhap | 0 | {bio-ngs,bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
+ microbegps | 0 | {bio} |
milib | 0 | {bio-dev,covid-19} |
nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
@@ -201,21 +194,26 @@ Last-Update: Wed, 12 May 2021 01:42:03 +0000
pique | 0 | {bio} |
plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,covid-19,bio} |
+ proalign | 0 | {bio-phylogeny,bio} |
pscan-chip | 0 | {bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
quorum | 0 | {bio} |
+ rdp-alignment | 0 | {bio} |
+ rdp-classifier | 0 | {bio} |
resfinder-db | 0 | {bio} |
+ rtax | 0 | {cloud,bio} |
sambamba | 0 | {bio} |
samblaster | 0 | {covid-19,bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
segemehl | 0 | {bio} |
seq-gen | 0 | {bio} |
+ sga | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
@@ -225,6 +223,7 @@ Last-Update: Wed, 12 May 2021 01:42:03 +0000
soapaligner | 0 | {bio} |
soapsnp | 0 | {bio} |
spaln | 0 | {covid-19,bio} |
+ sprai | 0 | {bio} |
srf | 0 | {bio-dev} |
surankco | 0 | {bio} |
svim | 0 | {bio} |
@@ -237,6 +236,7 @@ Last-Update: Wed, 12 May 2021 01:42:03 +0000
xdffileio | 0 | {imaging-dev} |
yaha | 0 | {bio} |
yanagiba | 0 | {bio,covid-19} |
+ zalign | 0 | {bio,cloud} |
mssstest | -1 | {tools} |
sight | -1 | {imaging-dev} |
(269 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/be59e70c3f22aa77b07862d01965c05da1bf1872
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/be59e70c3f22aa77b07862d01965c05da1bf1872
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