Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
da8c06cb by Andreas Tille at 2021-05-18T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,143 +1,154 @@
-Last-Update: Tue, 18 May 2021 01:42:03 +0000
+Last-Update: Tue, 18 May 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 180 | {covid-19,imaging} |
- orthanc | 96 | {practice,imaging,covid-19} |
- gdcm | 49 | {imaging-dev} |
- orthanc-wsi | 49 | {imaging,laboratory,practice,his,covid-19,oncology} |
- amide | 31 | {imaging} |
+ orthanc | 95 | {practice,imaging,covid-19} |
+ gdcm | 56 | {imaging-dev} |
+ orthanc-wsi | 48 | {imaging,laboratory,practice,his,covid-19,oncology} |
+ amide | 30 | {imaging} |
nipype | 30 | {imaging-dev,imaging} |
dicom3tools | 29 | {imaging} |
- htsjdk | 27 | {bio-dev} |
- dicomscope | 24 | {imaging} |
- dcm2niix | 21 | {imaging} |
+ htsjdk | 29 | {bio-dev} |
+ dcm2niix | 24 | {imaging} |
+ dicomscope | 23 | {imaging} |
openslide | 21 | {imaging} |
- gdcm | 20 | {imaging-dev} |
gdcm | 20 | {covid-19,imaging} |
+ gdcm | 20 | {imaging-dev} |
odin | 18 | {imaging-dev,imaging} |
gnumed-server | 17 | {covid-19,practice} |
pixelmed | 16 | {imaging} |
invesalius | 15 | {imaging} |
- ngs-sdk | 14 | {bio-dev} |
- minc-tools | 13 | {imaging} |
+ minc-tools | 15 | {imaging} |
+ ngs-sdk | 15 | {bio-dev} |
+ nifticlib | 13 | {imaging} |
orthanc-webviewer | 13 | {imaging} |
dicomnifti | 12 | {imaging} |
- nifticlib | 12 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
plastimatch | 11 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
vtk-dicom | 10 | {imaging} |
king | 9 | {imaging,typesetting} |
mia | 9 | {imaging} |
- ngs-sdk | 9 | {bio-dev} |
- ngs-sdk | 8 | {bio-dev} |
- adun.app | 7 | {bio} |
- bamkit | 7 | {covid-19,bio} |
+ adun.app | 8 | {bio} |
+ bamkit | 8 | {covid-19,bio} |
dicompyler | 7 | {oncology} |
+ ngs-sdk | 7 | {bio-dev} |
+ nifti2dicom | 7 | {imaging} |
openslide | 7 | {imaging-dev} |
nifti2dicom | 6 | {imaging} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
bart-view | 5 | {imaging} |
+ busco | 5 | {covid-19,bio} |
+ jebl2 | 5 | {bio-dev} |
libminc | 5 | {imaging-dev} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
salmid | 5 | {bio} |
- busco | 4 | {covid-19,bio} |
elastix | 4 | {imaging} |
- jebl2 | 4 | {bio-dev} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ jellyfish1 | 4 | {bio} |
librg-utils-perl | 4 | {bio} |
- pymia | 4 | {imaging-dev} |
+ melting | 4 | {bio,cloud} |
salmon | 4 | {bio,covid-19} |
stacks | 4 | {bio} |
staden | 4 | {bio} |
treeview | 4 | {bio,bio-phylogeny} |
+ blasr | 3 | {bio-ngs,bio} |
ea-utils | 3 | {bio} |
- embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {bio,cloud} |
getdata | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
- melting | 3 | {bio,cloud} |
+ lagan | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
+ obitools | 3 | {bio} |
oscar | 3 | {data,practice,tools} |
plasmidid | 3 | {covid-19,bio} |
- blasr | 2 | {bio-ngs,bio} |
+ pymia | 3 | {imaging-dev} |
+ tracetuner | 3 | {bio} |
+ anfo | 2 | {cloud,bio} |
+ beast-mcmc | 2 | {bio,bio-phylogeny} |
+ biojava-live | 2 | {bio-dev} |
+ biomaj3-cli | 2 | {cloud} |
+ bio-tradis | 2 | {bio-dev,bio} |
+ bitseq | 2 | {bio} |
blimps | 2 | {bio} |
+ brig | 2 | {bio} |
+ cat-bat | 2 | {bio,covid-19} |
ecopcr | 2 | {bio} |
- embassy-domalign | 2 | {bio,cloud} |
embassy-domsearch | 2 | {bio,cloud} |
- lagan | 2 | {bio} |
+ estscan | 2 | {bio} |
+ ghmm | 2 | {bio} |
+ lamarc | 2 | {bio} |
libsbml | 2 | {bio-dev} |
- obitools | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
opencfu | 2 | {laboratory} |
orthanc-gdcm | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
perm | 2 | {cloud,bio} |
+ phast | 2 | {bio} |
+ prime-phylo | 2 | {bio,cloud} |
rambo-k | 2 | {bio} |
runcircos-gui | 2 | {bio} |
saint | 2 | {bio} |
sibsim4 | 2 | {cloud,bio} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
- tracetuner | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- anfo | 1 | {cloud,bio} |
- beast-mcmc | 1 | {bio,bio-phylogeny} |
- biojava-live | 1 | {bio-dev} |
- biomaj3-cli | 1 | {cloud} |
- bio-tradis | 1 | {bio-dev,bio} |
- bitseq | 1 | {bio} |
- brig | 1 | {bio} |
- cat-bat | 1 | {bio,covid-19} |
+ arden | 1 | {bio,cloud} |
+ assemblytics | 1 | {bio} |
+ atropos | 1 | {bio} |
+ bustools | 1 | {bio,covid-19} |
+ canu | 1 | {bio} |
+ clonalframeml | 1 | {bio,covid-19} |
+ clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {cloud,bio} |
- estscan | 1 | {bio} |
+ fastml | 1 | {bio} |
fsm-lite | 1 | {bio} |
- ghmm | 1 | {bio} |
- lamarc | 1 | {bio} |
+ intake | 1 | {bio-dev,bio} |
+ ipig | 1 | {bio} |
libctapimkt | 1 | {practice} |
libdivsufsort | 1 | {bio-dev} |
libmuscle | 1 | {bio-dev} |
- metaphlan2 | 1 | {bio} |
+ libncl | 1 | {bio} |
+ logol | 1 | {bio} |
+ mauve-aligner | 1 | {bio} |
+ mhap | 1 | {bio-ngs,bio} |
+ microbegps | 1 | {bio} |
orthanc-python | 1 | {covid-19} |
paraclu | 1 | {bio,cloud} |
pbdagcon | 1 | {bio} |
- phast | 1 | {bio} |
phyutility | 1 | {cloud,bio} |
piler | 1 | {bio} |
+ pique | 1 | {bio} |
placnet | 1 | {bio} |
- prime-phylo | 1 | {bio,cloud} |
+ python-bcbio-gff | 1 | {bio-dev} |
qcumber | 1 | {bio} |
+ quorum | 1 | {bio} |
+ segemehl | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
spaced | 1 | {bio} |
+ spaln | 1 | {covid-19,bio} |
spread-phy | 1 | {bio-phylogeny,bio} |
suitename | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
- arden | 0 | {bio,cloud} |
- assemblytics | 0 | {bio} |
- atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
- bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
- canu | 0 | {bio} |
- clonalframeml | 0 | {bio,covid-19} |
- clonalorigin | 0 | {bio} |
delly | 0 | {bio,covid-19} |
dextractor | 0 | {covid-19,bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
- fastml | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
hinge | 0 | {bio} |
htscodecs | 0 | {covid-19,bio-dev} |
- intake | 0 | {bio-dev,bio} |
- ipig | 0 | {bio} |
jmodeltest | 0 | {bio-phylogeny,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
@@ -161,7 +172,6 @@ Last-Update: Tue, 18 May 2021 01:42:03 +0000
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
- libncl | 0 | {bio} |
libncl | 0 | {bio-dev} |
libpal-java | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
@@ -171,14 +181,10 @@ Last-Update: Tue, 18 May 2021 01:42:03 +0000
libstatgen | 0 | {bio-dev} |
libvistaio | 0 | {imaging-dev} |
libxdf | 0 | {imaging-dev} |
- logol | 0 | {bio} |
- mauve-aligner | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
- mhap | 0 | {bio-ngs,bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- microbegps | 0 | {bio} |
milib | 0 | {bio-dev,covid-19} |
nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
@@ -190,18 +196,15 @@ Last-Update: Tue, 18 May 2021 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
- pique | 0 | {bio} |
plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,covid-19,bio} |
proalign | 0 | {bio-phylogeny,bio} |
pscan-chip | 0 | {bio} |
- python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
- quorum | 0 | {bio} |
rdp-alignment | 0 | {bio} |
rdp-classifier | 0 | {bio} |
resfinder-db | 0 | {bio} |
@@ -210,7 +213,6 @@ Last-Update: Tue, 18 May 2021 01:42:03 +0000
samblaster | 0 | {covid-19,bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
- segemehl | 0 | {bio} |
seq-gen | 0 | {bio} |
sga | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
@@ -221,7 +223,6 @@ Last-Update: Tue, 18 May 2021 01:42:03 +0000
smrtanalysis | 0 | {bio,covid-19} |
soapaligner | 0 | {bio} |
soapsnp | 0 | {bio} |
- spaln | 0 | {covid-19,bio} |
sprai | 0 | {bio} |
srf | 0 | {bio-dev} |
surankco | 0 | {bio} |
@@ -239,5 +240,5 @@ Last-Update: Tue, 18 May 2021 01:42:03 +0000
zalign | 0 | {bio,cloud} |
mssstest | -1 | {tools} |
sight | -1 | {imaging-dev} |
-(269 rows)
+(270 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/da8c06cb84cd88436f9d9e528f14bf056501ee29
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/da8c06cb84cd88436f9d9e528f14bf056501ee29
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