Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
496f2e7b by Andreas Tille at 2021-05-19T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,20 +1,20 @@
-Last-Update: Wed, 19 May 2021 01:42:04 +0000
+Last-Update: Wed, 19 May 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {covid-19,imaging} |
- orthanc | 95 | {practice,imaging,covid-19} |
+ dcmtk | 181 | {covid-19,imaging} |
+ orthanc | 94 | {practice,imaging,covid-19} |
gdcm | 56 | {imaging-dev} |
orthanc-wsi | 48 | {imaging,laboratory,practice,his,covid-19,oncology} |
- amide | 30 | {imaging} |
+ amide | 31 | {imaging} |
+ dicom3tools | 31 | {imaging} |
nipype | 30 | {imaging-dev,imaging} |
- dicom3tools | 29 | {imaging} |
- htsjdk | 29 | {bio-dev} |
+ htsjdk | 27 | {bio-dev} |
+ dicomscope | 26 | {imaging} |
dcm2niix | 24 | {imaging} |
- dicomscope | 23 | {imaging} |
openslide | 21 | {imaging} |
- gdcm | 20 | {covid-19,imaging} |
gdcm | 20 | {imaging-dev} |
+ gdcm | 20 | {covid-19,imaging} |
odin | 18 | {imaging-dev,imaging} |
gnumed-server | 17 | {covid-19,practice} |
pixelmed | 16 | {imaging} |
@@ -24,87 +24,77 @@ Last-Update: Wed, 19 May 2021 01:42:04 +0000
nifticlib | 13 | {imaging} |
orthanc-webviewer | 13 | {imaging} |
dicomnifti | 12 | {imaging} |
- insighttoolkit4 | 11 | {imaging-dev} |
plastimatch | 11 | {imaging} |
+ insighttoolkit4 | 10 | {imaging-dev} |
ngs-sdk | 10 | {bio-dev} |
vtk-dicom | 10 | {imaging} |
king | 9 | {imaging,typesetting} |
mia | 9 | {imaging} |
- adun.app | 8 | {bio} |
bamkit | 8 | {covid-19,bio} |
+ ngs-sdk | 8 | {bio-dev} |
+ adun.app | 7 | {bio} |
dicompyler | 7 | {oncology} |
- ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
openslide | 7 | {imaging-dev} |
nifti2dicom | 6 | {imaging} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
bart-view | 5 | {imaging} |
busco | 5 | {covid-19,bio} |
- jebl2 | 5 | {bio-dev} |
- libminc | 5 | {imaging-dev} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
salmid | 5 | {bio} |
elastix | 4 | {imaging} |
- embassy-domainatrix | 4 | {cloud,bio} |
+ jebl2 | 4 | {bio-dev} |
jellyfish1 | 4 | {bio} |
+ libminc | 4 | {imaging-dev} |
librg-utils-perl | 4 | {bio} |
melting | 4 | {bio,cloud} |
salmon | 4 | {bio,covid-19} |
stacks | 4 | {bio} |
staden | 4 | {bio} |
treeview | 4 | {bio,bio-phylogeny} |
- blasr | 3 | {bio-ngs,bio} |
- ea-utils | 3 | {bio} |
- embassy-domalign | 3 | {bio,cloud} |
getdata | 3 | {bio} |
lagan | 3 | {bio} |
- nifticlib | 3 | {imaging-dev} |
- obitools | 3 | {bio} |
oscar | 3 | {data,practice,tools} |
plasmidid | 3 | {covid-19,bio} |
pymia | 3 | {imaging-dev} |
tracetuner | 3 | {bio} |
- anfo | 2 | {cloud,bio} |
- beast-mcmc | 2 | {bio,bio-phylogeny} |
biojava-live | 2 | {bio-dev} |
biomaj3-cli | 2 | {cloud} |
- bio-tradis | 2 | {bio-dev,bio} |
- bitseq | 2 | {bio} |
+ blasr | 2 | {bio-ngs,bio} |
blimps | 2 | {bio} |
brig | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- ecopcr | 2 | {bio} |
- embassy-domsearch | 2 | {bio,cloud} |
- estscan | 2 | {bio} |
+ ea-utils | 2 | {bio} |
+ embassy-domainatrix | 2 | {cloud,bio} |
+ embassy-domalign | 2 | {bio,cloud} |
ghmm | 2 | {bio} |
lamarc | 2 | {bio} |
libsbml | 2 | {bio-dev} |
- metaphlan2 | 2 | {bio} |
- opencfu | 2 | {laboratory} |
+ nifticlib | 2 | {imaging-dev} |
+ obitools | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
- perm | 2 | {cloud,bio} |
- phast | 2 | {bio} |
- prime-phylo | 2 | {bio,cloud} |
rambo-k | 2 | {bio} |
runcircos-gui | 2 | {bio} |
- saint | 2 | {bio} |
- sibsim4 | 2 | {cloud,bio} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
- acedb | 1 | {cloud,bio} |
+ anfo | 1 | {cloud,bio} |
arden | 1 | {bio,cloud} |
assemblytics | 1 | {bio} |
atropos | 1 | {bio} |
+ beast-mcmc | 1 | {bio,bio-phylogeny} |
+ bio-tradis | 1 | {bio-dev,bio} |
+ bitseq | 1 | {bio} |
bustools | 1 | {bio,covid-19} |
canu | 1 | {bio} |
clonalframeml | 1 | {bio,covid-19} |
clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {cloud,bio} |
+ embassy-domsearch | 1 | {bio,cloud} |
+ estscan | 1 | {bio} |
fastml | 1 | {bio} |
- fsm-lite | 1 | {bio} |
intake | 1 | {bio-dev,bio} |
ipig | 1 | {bio} |
libctapimkt | 1 | {practice} |
@@ -113,25 +103,29 @@ Last-Update: Wed, 19 May 2021 01:42:04 +0000
libncl | 1 | {bio} |
logol | 1 | {bio} |
mauve-aligner | 1 | {bio} |
+ metaphlan2 | 1 | {bio} |
mhap | 1 | {bio-ngs,bio} |
microbegps | 1 | {bio} |
+ opencfu | 1 | {laboratory} |
orthanc-python | 1 | {covid-19} |
- paraclu | 1 | {bio,cloud} |
pbdagcon | 1 | {bio} |
+ phast | 1 | {bio} |
phyutility | 1 | {cloud,bio} |
piler | 1 | {bio} |
pique | 1 | {bio} |
placnet | 1 | {bio} |
+ prime-phylo | 1 | {bio,cloud} |
python-bcbio-gff | 1 | {bio-dev} |
qcumber | 1 | {bio} |
quorum | 1 | {bio} |
+ saint | 1 | {bio} |
segemehl | 1 | {bio} |
+ sibsim4 | 1 | {cloud,bio} |
simpleitk | 1 | {imaging-dev} |
- spaced | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
spread-phy | 1 | {bio-phylogeny,bio} |
- suitename | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
+ acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -140,10 +134,12 @@ Last-Update: Wed, 19 May 2021 01:42:04 +0000
camp | 0 | {imaging-dev} |
delly | 0 | {bio,covid-19} |
dextractor | 0 | {covid-19,bio} |
+ ecopcr | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
+ fsm-lite | 0 | {bio} |
gatb-core | 0 | {bio} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
@@ -191,9 +187,11 @@ Last-Update: Wed, 19 May 2021 01:42:04 +0000
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ paraclu | 0 | {bio,cloud} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
+ perm | 0 | {cloud,bio} |
pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
plasmidseeker | 0 | {bio} |
@@ -201,8 +199,8 @@ Last-Update: Wed, 19 May 2021 01:42:04 +0000
proalign | 0 | {bio-phylogeny,bio} |
pscan-chip | 0 | {bio} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
rdp-alignment | 0 | {bio} |
@@ -223,8 +221,10 @@ Last-Update: Wed, 19 May 2021 01:42:04 +0000
smrtanalysis | 0 | {bio,covid-19} |
soapaligner | 0 | {bio} |
soapsnp | 0 | {bio} |
+ spaced | 0 | {bio} |
sprai | 0 | {bio} |
srf | 0 | {bio-dev} |
+ suitename | 0 | {bio} |
surankco | 0 | {bio} |
svim | 0 | {bio} |
thesias | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/496f2e7b84ca9affaa0b3d7dce048a35d35bb4a6
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/496f2e7b84ca9affaa0b3d7dce048a35d35bb4a6
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