[med-svn] [Git][med-team/python-gtfparse][master] 5 commits: d/control: Add B-D on python3-pandas and python3-six

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / python-gtfparse


Commits:
f8436127 by Nilesh Patra at 2021-05-20T19:33:50+05:30
d/control: Add B-D on python3-pandas and python3-six

- - - - -
ab191799 by Nilesh Patra at 2021-05-20T19:34:13+05:30
Update d/u/metadata

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a124a5e0 by Nilesh Patra at 2021-05-20T19:45:05+05:30
Add B-D on python3-nose with nocheck, run tests

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a42b0f0d by Nilesh Patra at 2021-05-20T19:49:15+05:30
d/rules: Do not run 3 tests since data dir/ is not vendored on pypi

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4a4e1830 by Nilesh Patra at 2021-05-20T19:49:28+05:30
Upload to unstable

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4 changed files:

- debian/changelog
- debian/control
- debian/rules
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,5 +1,6 @@
-python-gtfparse (1.2.1+ds-1) UNRELEASED; urgency=medium
+python-gtfparse (1.2.1+ds-1) unstable; urgency=medium
 
+  [ Steffen Moeller, Nilesh Patra ]
   * Initial release (Closes: #988801)
 
- -- Steffen Moeller <moeller at debian.org>  Wed, 19 May 2021 19:47:00 +0200
+ -- Steffen Moeller <moeller at debian.org>  Thu, 20 May 2021 19:34:48 +0530


=====================================
debian/control
=====================================
@@ -3,7 +3,7 @@ Section: science
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all
+Build-Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-six, python3-pandas, python3-nose
 Standards-Version: 4.5.1
 Homepage: https://github.com/openvax/gtfparse
 Vcs-Browser: https://salsa.debian.org/med-team/python-gtfparse


=====================================
debian/rules
=====================================
@@ -5,6 +5,13 @@ export PYBUILD_NAME=python-gtfparse
 %:
 	dh $@ --with python3 --buildsystem=pybuild
 
+override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	# This is done because data/ dir is not vendored on pypi
+	rm -f test/test_refseq_gtf.py test/test_ensembl_gtf.py test/test_read_stringtie_gtf.py
+	nosetests3
+endif
+
 override_dh_auto_clean:
 	dh_auto_clean
 	rm -f gtfparse.egg-info/SOURCES.txt


=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,10 @@
+---
+Archive: GitHub
+Bug-Database: https://github.com/openvax/gtfparse/issues
+Bug-Submit: https://github.com/openvax/gtfparse/issues/new
+Changelog: https://github.com/openvax/gtfparse/tags
+Repository: https://github.com/openvax/gtfparse.git
+Repository-Browse: https://github.com/openvax/gtfparse
 Registry:
  - Name: conda:bioconda
    Entry: gtfparser



View it on GitLab: https://salsa.debian.org/med-team/python-gtfparse/-/compare/e2250ad2c44568810d8245566d30feaca0d9a164...4a4e18304958a35e7e98b69399f807a417a889bb

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-gtfparse/-/compare/e2250ad2c44568810d8245566d30feaca0d9a164...4a4e18304958a35e7e98b69399f807a417a889bb
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