[med-svn] [Git][med-team/xpore][master] 7 commits: The package is an application hence change binary package names accordingly

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / xpore


Commits:
38c76cba by Nilesh Patra at 2021-05-21T16:37:03+00:00
The package is an application hence change binary package names accordingly

- - - - -
4321bf7c by Nilesh Patra at 2021-05-21T16:42:31+00:00
Install required files in the application binary

- - - - -
5960e471 by Nilesh Patra at 2021-05-21T22:40:47+05:30
Install docs at proper location

- - - - -
541c37ad by Nilesh Patra at 2021-05-21T22:41:20+05:30
Change section of -doc package to doc

- - - - -
4079395d by Nilesh Patra at 2021-05-21T22:41:43+05:30
Add d/xpore-doc.doc-base

- - - - -
e314c1a4 by Nilesh Patra at 2021-05-21T22:42:18+05:30
Add upstream/metadata

- - - - -
766a3781 by Nilesh Patra at 2021-05-21T22:49:17+05:30
Mention Steffen's full name

- - - - -


8 changed files:

- debian/control
- debian/copyright
- − debian/python-xpore-doc.docs
- debian/rules
- + debian/upstream/metadata
- + debian/xpore-doc.doc-base
- + debian/xpore-doc.install
- + debian/xpore.install


Changes:

=====================================
debian/control
=====================================
@@ -10,10 +10,10 @@ Vcs-Git: https://salsa.debian.org/med-team/xpore.git
 #Testsuite: autopkgtest-pkg-python
 Rules-Requires-Root: no
 
-Package: python3-xpore
+Package: xpore
 Architecture: all
 Depends: ${python3:Depends}, ${misc:Depends}
-Suggests: python-xpore-doc
+Suggests: xpore-doc
 Description: Nanopore analysis of differential RNA modifications
  RNA is transcribed from DNA, possibly spliced and exported to the
  cytoplasm - fine - but its bases can also be modified, edited, and
@@ -26,9 +26,10 @@ Description: Nanopore analysis of differential RNA modifications
  to a difference. And maybe one can even statistically associate such
  differences with a molecular or clinical phenotype.
 
-Package: python-xpore-doc
+Package: xpore-doc
+Section: doc
 Architecture: all
 Depends: ${sphinxdoc:Depends}, ${misc:Depends}
 Suggests: python-xpore-doc
-Description: documentation for the ppmd Python library
+Description: documentation for the xpore Python package
  This package provides documentation for xpore


=====================================
debian/copyright
=====================================
@@ -4,12 +4,12 @@ Upstream-Contact: Ploy N. Pratanwanich <naruemon.p at chula.ac.th>
 Source: https://github.com/GoekeLab/xpore
 
 Files: *
-Copyright:      Ploy N. Pratanwanich <naruemon.p at chula.ac.th>
+Copyright: Ploy N. Pratanwanich <naruemon.p at chula.ac.th>
            2020 Göke Lab
 License: Expat
 
 Files: debian/*
-Copyright: 2021 steffen <moeller at debian.org>
+Copyright: 2021 Steffen Moeller <moeller at debian.org>
 License: Expat
 
 License: Expat


=====================================
debian/python-xpore-doc.docs deleted
=====================================
@@ -1 +0,0 @@
-.pybuild/docs/*


=====================================
debian/rules
=====================================
@@ -3,8 +3,6 @@
 # output every command that modifies files on the build system.
 #export DH_VERBOSE = 1
 
-export PYBUILD_NAME=xpore
-
 %:
 	dh $@ --with python3,sphinxdoc --buildsystem=pybuild
 
@@ -12,8 +10,10 @@ export PYBUILD_NAME=xpore
 override_dh_auto_build:
 	dh_auto_build
 ifeq (,$(filter nodoc,$(DEB_BUILD_OPTIONS)))
-	cd docs/source && \
 	PYTHONPATH=$(CURDIR) http_proxy='http://127.0.0.1:9/' https_proxy='https://127.0.0.1:9/' \
-	sphinx-build -N -E -T -b html . $(CURDIR)/.pybuild/docs/html/
-	rm -rf $(CURDIR)/.pybuild/docs/html/.doctrees
+	sphinx-build -N -E -T -b html docs/source build/html/
+	rm -rf build/html/.doctrees build/html/.nojekyll
 endif
+
+#execute_after_dh_install:
+#	mv debian/python3-xpore debian/xpore


=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1,7 @@
+---
+Archive: GitHub
+Bug-Database: https://github.com/GoekeLab/xpore/issues
+Bug-Submit: https://github.com/GoekeLab/xpore/issues/new
+Changelog: https://github.com/GoekeLab/xpore/tags
+Repository: https://github.com/GoekeLab/xpore.git
+Repository-Browse: https://github.com/GoekeLab/xpore


=====================================
debian/xpore-doc.doc-base
=====================================
@@ -0,0 +1,9 @@
+Document: xpore
+Title: Documentation for xpore
+Author: Goke Lab
+Abstract: xpore is a Python package for detection of differentail RNA modifications from Nanopore sequencing data
+Section: Science/Biology
+
+Format: HTML
+Index: /usr/share/doc/xpore-doc/html/index.html
+Files: /usr/share/doc/xpore-doc/html/*.html


=====================================
debian/xpore-doc.install
=====================================
@@ -0,0 +1 @@
+build/html/ usr/share/doc/xpore-doc/


=====================================
debian/xpore.install
=====================================
@@ -0,0 +1,2 @@
+usr/bin/
+usr/lib/python*/



View it on GitLab: https://salsa.debian.org/med-team/xpore/-/compare/81ae2df7519ebe5b67b03b2d6d9ea1c5e759082d...766a3781d2b7117b8b14341e9009dbac54307910

-- 
View it on GitLab: https://salsa.debian.org/med-team/xpore/-/compare/81ae2df7519ebe5b67b03b2d6d9ea1c5e759082d...766a3781d2b7117b8b14341e9009dbac54307910
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