Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
c3c1beb2 by Andreas Tille at 2021-05-28T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,129 +1,157 @@
-Last-Update: Fri, 28 May 2021 01:42:04 +0000
+Last-Update: Fri, 28 May 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {imaging,covid-19} |
+ dcmtk | 173 | {imaging,covid-19} |
orthanc | 94 | {practice,imaging,covid-19} |
- orthanc-wsi | 50 | {oncology,his,imaging,covid-19,practice,laboratory} |
- gdcm | 49 | {imaging-dev} |
- htsjdk | 30 | {bio-dev} |
- dicom3tools | 29 | {imaging} |
+ orthanc-wsi | 49 | {oncology,his,imaging,covid-19,practice,laboratory} |
+ gdcm | 47 | {imaging-dev} |
+ htsjdk | 29 | {bio-dev} |
amide | 28 | {imaging} |
- dicomscope | 26 | {imaging} |
- dcm2niix | 22 | {imaging} |
- gdcm | 20 | {imaging-dev} |
- gdcm | 20 | {imaging,covid-19} |
- openslide | 20 | {imaging} |
+ dicom3tools | 28 | {imaging} |
+ dicomscope | 24 | {imaging} |
+ dcm2niix | 21 | {imaging} |
+ gdcm | 19 | {imaging,covid-19} |
+ openslide | 19 | {imaging} |
+ gdcm | 18 | {imaging-dev} |
minc-tools | 17 | {imaging} |
odin | 16 | {imaging-dev,imaging} |
gnumed-server | 15 | {covid-19,practice} |
invesalius | 14 | {imaging} |
- nifticlib | 14 | {imaging} |
+ nifticlib | 13 | {imaging} |
orthanc-webviewer | 13 | {imaging} |
- dicomnifti | 12 | {imaging} |
- ngs-sdk | 12 | {bio-dev} |
pixelmed | 12 | {imaging} |
+ dicomnifti | 11 | {imaging} |
+ ngs-sdk | 11 | {bio-dev} |
+ vtk-dicom | 11 | {imaging} |
+ adun.app | 10 | {bio} |
insighttoolkit4 | 10 | {imaging-dev} |
+ ngs-sdk | 10 | {bio-dev} |
plastimatch | 10 | {imaging} |
- vtk-dicom | 10 | {imaging} |
- adun.app | 9 | {bio} |
- king | 9 | {imaging,typesetting} |
- ngs-sdk | 9 | {bio-dev} |
- mia | 8 | {imaging} |
+ mia | 9 | {imaging} |
+ king | 8 | {imaging,typesetting} |
ngs-sdk | 8 | {bio-dev} |
- nifti2dicom | 8 | {imaging} |
- dicompyler | 7 | {oncology} |
+ openslide | 8 | {imaging-dev} |
nifti2dicom | 7 | {imaging} |
- nipype | 7 | {imaging,imaging-dev} |
- openslide | 7 | {imaging-dev} |
+ dicompyler | 6 | {oncology} |
+ melting | 6 | {cloud,bio} |
+ nifti2dicom | 6 | {imaging} |
bart-view | 5 | {imaging} |
busco | 5 | {covid-19,bio} |
- melting | 5 | {cloud,bio} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
+ runcircos-gui | 5 | {bio} |
salmid | 5 | {bio} |
+ treeview | 5 | {bio-phylogeny,bio} |
bamkit | 4 | {bio,covid-19} |
+ biojava-live | 4 | {bio-dev} |
+ jebl2 | 4 | {bio-dev} |
+ jellyfish1 | 4 | {bio} |
+ lagan | 4 | {bio} |
libminc | 4 | {imaging-dev} |
+ librg-utils-perl | 4 | {bio} |
orthanc-postgresql | 4 | {imaging} |
oscar | 4 | {tools,practice,data} |
pymia | 4 | {imaging-dev} |
salmon | 4 | {covid-19,bio} |
- treeview | 4 | {bio-phylogeny,bio} |
- biojava-live | 3 | {bio-dev} |
+ stacks | 4 | {bio} |
+ staden | 4 | {bio} |
+ tracetuner | 4 | {bio} |
+ biomaj3-cli | 3 | {cloud} |
+ brig | 3 | {bio} |
+ ea-utils | 3 | {bio} |
elastix | 3 | {imaging} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {cloud,bio} |
getdata | 3 | {bio} |
- jebl2 | 3 | {bio-dev} |
- jellyfish1 | 3 | {bio} |
- lagan | 3 | {bio} |
- librg-utils-perl | 3 | {bio} |
+ ghmm | 3 | {bio} |
+ lamarc | 3 | {bio} |
libsbml | 3 | {bio-dev} |
+ logol | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
+ nipype | 3 | {imaging,imaging-dev} |
+ obitools | 3 | {bio} |
orthanc-mysql | 3 | {imaging} |
- runcircos-gui | 3 | {bio} |
- stacks | 3 | {bio} |
- staden | 3 | {bio} |
- tracetuner | 3 | {bio} |
- biomaj3-cli | 2 | {cloud} |
+ anfo | 2 | {cloud,bio} |
+ arden | 2 | {cloud,bio} |
+ assemblytics | 2 | {bio} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
+ bio-tradis | 2 | {bio-dev,bio} |
+ bitseq | 2 | {bio} |
+ blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
- brig | 2 | {bio} |
+ canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
+ clonalframeml | 2 | {covid-19,bio} |
cufflinks | 2 | {bio,cloud} |
- ea-utils | 2 | {bio} |
- embassy-domainatrix | 2 | {cloud,bio} |
- embassy-domalign | 2 | {cloud,bio} |
- ghmm | 2 | {bio} |
- lamarc | 2 | {bio} |
+ embassy-domsearch | 2 | {cloud,bio} |
+ estscan | 2 | {bio} |
+ fastml | 2 | {bio} |
+ ipig | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
- logol | 2 | {bio} |
- obitools | 2 | {bio} |
+ libncl | 2 | {bio} |
+ mauve-aligner | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
+ mhap | 2 | {bio-ngs,bio} |
+ microbegps | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
+ pbdagcon | 2 | {bio} |
+ phast | 2 | {bio} |
+ phyutility | 2 | {cloud,bio} |
+ placnet | 2 | {bio} |
+ prime-phylo | 2 | {cloud,bio} |
+ quorum | 2 | {bio} |
+ saint | 2 | {bio} |
+ sambamba | 2 | {bio} |
+ segemehl | 2 | {bio} |
+ sibsim4 | 2 | {cloud,bio} |
sift | 2 | {bio} |
- sight | 2 | {imaging} |
- anfo | 1 | {cloud,bio} |
- arden | 1 | {cloud,bio} |
- assemblytics | 1 | {bio} |
+ spread-phy | 2 | {bio,bio-phylogeny} |
atropos | 1 | {bio} |
- beast-mcmc | 1 | {bio-phylogeny,bio} |
- bio-tradis | 1 | {bio-dev,bio} |
- bitseq | 1 | {bio} |
- blasr | 1 | {bio,bio-ngs} |
bustools | 1 | {bio,covid-19} |
- canu | 1 | {bio} |
- clonalframeml | 1 | {covid-19,bio} |
clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
- embassy-domsearch | 1 | {cloud,bio} |
- estscan | 1 | {bio} |
- fastml | 1 | {bio} |
+ delly | 1 | {covid-19,bio} |
+ ecopcr | 1 | {bio} |
+ fsm-lite | 1 | {bio} |
+ gatb-core | 1 | {bio} |
+ hinge | 1 | {bio} |
intake | 1 | {bio-dev,bio} |
- ipig | 1 | {bio} |
+ jmodeltest | 1 | {bio,bio-phylogeny} |
libmuscle | 1 | {bio-dev} |
- libncl | 1 | {bio} |
+ libpal-java | 1 | {bio-dev} |
+ librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- mauve-aligner | 1 | {bio} |
- metaphlan2 | 1 | {bio} |
- mhap | 1 | {bio-ngs,bio} |
- microbegps | 1 | {bio} |
orthanc-python | 1 | {covid-19} |
- pbdagcon | 1 | {bio} |
- phast | 1 | {bio} |
- phyutility | 1 | {cloud,bio} |
+ paraclu | 1 | {cloud,bio} |
+ perm | 1 | {bio,cloud} |
+ piler | 1 | {bio} |
pique | 1 | {bio} |
- placnet | 1 | {bio} |
- prime-phylo | 1 | {cloud,bio} |
+ plasmidseeker | 1 | {bio} |
+ proalign | 1 | {bio-phylogeny,bio} |
python-bcbio-gff | 1 | {bio-dev} |
qcumber | 1 | {bio} |
- quorum | 1 | {bio} |
- saint | 1 | {bio} |
- sambamba | 1 | {bio} |
+ rambo-k | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ rdp-classifier | 1 | {bio} |
+ rtax | 1 | {cloud,bio} |
+ samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
- segemehl | 1 | {bio} |
- sibsim4 | 1 | {cloud,bio} |
+ sga | 1 | {bio} |
+ sight | 1 | {imaging} |
simpleitk | 1 | {imaging-dev} |
simrisc | 1 | {oncology} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
+ spaced | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
- spread-phy | 1 | {bio,bio-phylogeny} |
+ sprai | 1 | {bio} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
+ tvc | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
+ yaha | 1 | {bio} |
+ zalign | 1 | {cloud,bio} |
acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19,bio} |
@@ -131,20 +159,14 @@ Last-Update: Fri, 28 May 2021 01:42:04 +0000
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
- delly | 0 | {covid-19,bio} |
dextractor | 0 | {covid-19,bio} |
- ecopcr | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
- fsm-lite | 0 | {bio} |
gatb-core | 0 | {bio-dev} |
- gatb-core | 0 | {bio} |
gifticlib | 0 | {imaging-dev} |
- hinge | 0 | {bio} |
htscodecs | 0 | {covid-19,bio-dev} |
- jmodeltest | 0 | {bio,bio-phylogeny} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -168,10 +190,8 @@ Last-Update: Fri, 28 May 2021 01:42:04 +0000
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libncl | 0 | {bio-dev} |
- libpal-java | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
- librdp-taxonomy-tree-java | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
@@ -186,56 +206,36 @@ Last-Update: Fri, 28 May 2021 01:42:04 +0000
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- paraclu | 0 | {cloud,bio} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- perm | 0 | {bio,cloud} |
pigx-rnaseq | 0 | {bio,covid-19} |
- piler | 0 | {bio} |
pilercr | 0 | {bio} |
plasmidid | 0 | {covid-19,bio} |
- plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio,covid-19,bio-phylogeny} |
- proalign | 0 | {bio-phylogeny,bio} |
pscan-chip | 0 | {bio} |
python-epimodels | 0 | {epi} |
python-seqcluster | 0 | {covid-19,bio-dev} |
python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
- rambo-k | 0 | {bio} |
- rdp-alignment | 0 | {bio} |
- rdp-classifier | 0 | {bio} |
resfinder-db | 0 | {bio} |
- rtax | 0 | {cloud,bio} |
- samblaster | 0 | {bio,covid-19} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- sga | 0 | {bio} |
shovill | 0 | {covid-19,bio} |
simpleitk | 0 | {imaging-dev} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
- soapaligner | 0 | {bio} |
- soapsnp | 0 | {bio} |
- spaced | 0 | {bio} |
- sprai | 0 | {bio} |
srf | 0 | {bio-dev} |
- suitename | 0 | {bio} |
- surankco | 0 | {bio} |
svim | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {covid-19,bio} |
trace2dbest | 0 | {bio} |
- tvc | 0 | {bio} |
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
- yaha | 0 | {bio} |
yanagiba | 0 | {covid-19,bio} |
- zalign | 0 | {cloud,bio} |
libmaus2 | -1 | {bio-dev,covid-19} |
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c3c1beb29ffa48b2f5ec7747a66a07d8253e10ab
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