Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
42a1c7e9 by Andreas Tille at 2021-05-31T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,74 +1,67 @@
-Last-Update: Mon, 31 May 2021 01:42:04 +0000
+Last-Update: Mon, 31 May 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 168 | {imaging,covid-19} |
- orthanc | 91 | {practice,imaging,covid-19} |
- orthanc-wsi | 48 | {oncology,his,imaging,covid-19,practice,laboratory} |
- gdcm | 47 | {imaging-dev} |
- dicom3tools | 30 | {imaging} |
+ dcmtk | 173 | {imaging,covid-19} |
+ orthanc | 92 | {practice,imaging,covid-19} |
+ gdcm | 49 | {imaging-dev} |
+ orthanc-wsi | 49 | {oncology,his,imaging,covid-19,practice,laboratory} |
+ dicom3tools | 29 | {imaging} |
amide | 27 | {imaging} |
- htsjdk | 27 | {bio-dev} |
- dcm2niix | 22 | {imaging} |
- dicomscope | 22 | {imaging} |
- openslide | 18 | {imaging} |
- gdcm | 17 | {imaging,covid-19} |
+ htsjdk | 26 | {bio-dev} |
+ dcm2niix | 23 | {imaging} |
+ dicomscope | 23 | {imaging} |
+ openslide | 21 | {imaging} |
+ gdcm | 18 | {imaging,covid-19} |
+ odin | 18 | {imaging-dev,imaging} |
minc-tools | 17 | {imaging} |
- odin | 17 | {imaging-dev,imaging} |
gdcm | 16 | {imaging-dev} |
gnumed-server | 15 | {covid-19,practice} |
- invesalius | 15 | {imaging} |
- nifticlib | 12 | {imaging} |
+ invesalius | 14 | {imaging} |
+ pixelmed | 13 | {imaging} |
orthanc-webviewer | 12 | {imaging} |
- pixelmed | 12 | {imaging} |
+ adun.app | 11 | {bio} |
dicomnifti | 11 | {imaging} |
- adun.app | 10 | {bio} |
+ nifticlib | 11 | {imaging} |
insighttoolkit4 | 10 | {imaging-dev} |
plastimatch | 10 | {imaging} |
- mia | 9 | {imaging} |
+ mia | 8 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
king | 7 | {imaging,typesetting} |
ngs-sdk | 7 | {bio-dev} |
- nifti2dicom | 7 | {imaging} |
- openslide | 7 | {imaging-dev} |
- dicompyler | 6 | {oncology} |
melting | 6 | {cloud,bio} |
nifti2dicom | 6 | {imaging} |
busco | 5 | {covid-19,bio} |
- runcircos-gui | 5 | {bio} |
+ dicompyler | 5 | {oncology} |
+ nifti2dicom | 5 | {imaging} |
+ obitools | 5 | {bio} |
+ openslide | 5 | {imaging-dev} |
salmid | 5 | {bio} |
- treeview | 5 | {bio-phylogeny,bio} |
bamkit | 4 | {bio,covid-19} |
bart-view | 4 | {imaging} |
jebl2 | 4 | {bio-dev} |
- jellyfish1 | 4 | {bio} |
+ lagan | 4 | {bio} |
libminc | 4 | {imaging-dev} |
librg-utils-perl | 4 | {bio} |
- obitools | 4 | {bio} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
orthanc-postgresql | 4 | {imaging} |
- oscar | 4 | {tools,practice,data} |
pymia | 4 | {imaging-dev} |
+ runcircos-gui | 4 | {bio} |
+ salmon | 4 | {covid-19,bio} |
stacks | 4 | {bio} |
+ staden | 4 | {bio} |
tracetuner | 4 | {bio} |
biojava-live | 3 | {bio-dev} |
biomaj3-cli | 3 | {cloud} |
bio-tradis | 3 | {bio-dev,bio} |
brig | 3 | {bio} |
ea-utils | 3 | {bio} |
- elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {cloud,bio} |
- getdata | 3 | {bio} |
- ghmm | 3 | {bio} |
- lagan | 3 | {bio} |
- lamarc | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
libsbml | 3 | {bio-dev} |
nifticlib | 3 | {imaging-dev} |
nipype | 3 | {imaging,imaging-dev} |
orthanc-mysql | 3 | {imaging} |
- salmon | 3 | {covid-19,bio} |
- staden | 3 | {bio} |
+ treeview | 3 | {bio-phylogeny,bio} |
anfo | 2 | {cloud,bio} |
arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
@@ -79,11 +72,15 @@ Last-Update: Mon, 31 May 2021 01:42:04 +0000
canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
clonalframeml | 2 | {covid-19,bio} |
- cufflinks | 2 | {bio,cloud} |
- embassy-domsearch | 2 | {cloud,bio} |
+ elastix | 2 | {imaging} |
+ embassy-domainatrix | 2 | {cloud,bio} |
+ embassy-domalign | 2 | {cloud,bio} |
estscan | 2 | {bio} |
fastml | 2 | {bio} |
+ getdata | 2 | {bio} |
+ ghmm | 2 | {bio} |
ipig | 2 | {bio} |
+ lamarc | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
libncl | 2 | {bio} |
logol | 2 | {bio} |
@@ -92,14 +89,13 @@ Last-Update: Mon, 31 May 2021 01:42:04 +0000
mhap | 2 | {bio-ngs,bio} |
microbegps | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
+ oscar | 2 | {tools,practice,data} |
papyrus | 2 | {imaging-dev} |
- pbdagcon | 2 | {bio} |
phast | 2 | {bio} |
phyutility | 2 | {cloud,bio} |
placnet | 2 | {bio} |
prime-phylo | 2 | {cloud,bio} |
quorum | 2 | {bio} |
- saint | 2 | {bio} |
sambamba | 2 | {bio} |
segemehl | 2 | {bio} |
sibsim4 | 2 | {cloud,bio} |
@@ -110,8 +106,10 @@ Last-Update: Mon, 31 May 2021 01:42:04 +0000
bustools | 1 | {bio,covid-19} |
clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
+ cufflinks | 1 | {bio,cloud} |
delly | 1 | {covid-19,bio} |
ecopcr | 1 | {bio} |
+ embassy-domsearch | 1 | {cloud,bio} |
fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio} |
hinge | 1 | {bio} |
@@ -125,17 +123,18 @@ Last-Update: Mon, 31 May 2021 01:42:04 +0000
libvistaio | 1 | {imaging-dev} |
orthanc-python | 1 | {covid-19} |
paraclu | 1 | {cloud,bio} |
+ pbdagcon | 1 | {bio} |
perm | 1 | {bio,cloud} |
piler | 1 | {bio} |
pique | 1 | {bio} |
plasmidseeker | 1 | {bio} |
proalign | 1 | {bio-phylogeny,bio} |
python-bcbio-gff | 1 | {bio-dev} |
- qcumber | 1 | {bio} |
rambo-k | 1 | {bio} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
rtax | 1 | {cloud,bio} |
+ saint | 1 | {bio} |
samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
sga | 1 | {bio} |
@@ -216,6 +215,7 @@ Last-Update: Mon, 31 May 2021 01:42:04 +0000
python-seqcluster | 0 | {covid-19,bio-dev} |
python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
+ qcumber | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/42a1c7e9c9ef81b6f6d3c19f8443a27036907ecc
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/42a1c7e9c9ef81b6f6d3c19f8443a27036907ecc
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