[med-svn] [Git][med-team/nextflow][master] 20 commits: Patching to convert an array into a list in the groovy part

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / nextflow


Commits:
e9f88400 by Pierre Gruet at 2021-05-03T15:59:53+02:00
Patching to convert an array into a list in the groovy part

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93e3ee0f by Pierre Gruet at 2021-05-03T16:01:34+02:00
Adding dependencies and using Maven coordinates accordingly

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8486f05c by Pierre Gruet at 2021-05-03T16:03:45+02:00
Updating d/watch for Github new release/tag links

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8475845d by Pierre Gruet at 2021-05-03T17:53:45+02:00
Refreshing d/copyright for last upstream version, preparing to repack

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7d9e7f7f by Pierre Gruet at 2021-05-03T17:54:07+02:00
New upstream version 21.04.0+dfsg
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594d0a9e by Pierre Gruet at 2021-05-03T17:54:18+02:00
Update upstream source from tag 'upstream/21.04.0+dfsg'

Update to upstream version '21.04.0+dfsg'
with Debian dir c0d60a471793313d8695f095d7a1dd867abe66ea
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872666d3 by Pierre Gruet at 2021-05-03T17:55:04+02:00
Updating changelog for new upstream version

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fcb5d9bb by Pierre Gruet at 2021-05-05T14:38:27+02:00
Refreshing patches

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3de9679f by Pierre Gruet at 2021-05-31T11:28:04+02:00
Adding other test fixtures invocations to hide

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1c6ad5a3 by Pierre Gruet at 2021-05-31T11:46:22+02:00
Fixing tiny syntax issues related to old Debian-packaged groovy

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b48899b9 by Pierre Gruet at 2021-05-31T11:49:25+02:00
Adding dependencies and Maven coordinates

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7103cb7b by Pierre Gruet at 2021-05-31T11:50:03+02:00
Providing the upstream changelog with a d/*.docs file

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cd1e2226 by Pierre Gruet at 2021-05-31T11:52:15+02:00
Omit the files in buildSrc for the Debian build

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5ff673d7 by Pierre Gruet at 2021-05-31T11:54:52+02:00
Skipping useless tasks in build.gradle in plugins/

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05e3fb0b by Pierre Gruet at 2021-05-31T12:04:43+02:00
Debian-packaged gradle needs a tiny syntax change

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45974649 by Pierre Gruet at 2021-05-31T12:05:17+02:00
Skipping three plugins as the corresponding SDK are not in Debian

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a77166ef by Pierre Gruet at 2021-05-31T12:06:06+02:00
Removing an annotation parameter due to old Debian-packaged groovy

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071de4b9 by Pierre Gruet at 2021-05-31T12:06:32+02:00
The package of grengine has changed in its last release

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6373d29f by Pierre Gruet at 2021-05-31T17:46:26+02:00
Putting a FIXME in d/rules, tests need to be executed

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f458308e by Pierre Gruet at 2021-05-31T17:46:47+02:00
Summing up the state of packaging in d/TODO

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30 changed files:

- − .github/ISSUE_TEMPLATE/bug_report.md
- − .github/ISSUE_TEMPLATE/general_question.md
- − .github/ISSUE_TEMPLATE/new_feature.md
- − .github/PULL_REQUEST_TEMPLATE/pull_request_template.md
- − .github/stale.yml
- − .github/workflows/README.md
- − .github/workflows/build.yml
- − .gitignore
- GIT-README.md
- Makefile
- NOTICE
- README.md
- VERSION
- build.gradle
- + buildSrc/README.md
- + buildSrc/build.gradle
- + buildSrc/settings.gradle
- + buildSrc/src/main/groovy/io/nextflow/gradle/NextflowBuildPlugin.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/model/PluginMeta.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/model/PluginRelease.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/model/PluginsRepo.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/model/S3Extension.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/tasks/AbstractS3Task.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/tasks/GithubRepositoryPublisher.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/tasks/GithubUploader.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/tasks/S3Download.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/tasks/S3Upload.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/util/BucketTokenizer.groovy
- + buildSrc/src/main/groovy/io/nextflow/gradle/util/GithubClient.groovy
- changelog.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/nextflow/-/compare/814dba498cf808cc59dd85882f9b33d00375db8d...f458308efd5a81562af6645116322db77c96620e

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View it on GitLab: https://salsa.debian.org/med-team/nextflow/-/compare/814dba498cf808cc59dd85882f9b33d00375db8d...f458308efd5a81562af6645116322db77c96620e
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