Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
bd809d16 by Andreas Tille at 2021-11-06T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,126 +1,101 @@
-Last-Update: Sat, 06 Nov 2021 01:42:03 +0000
+Last-Update: Sat, 06 Nov 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {imaging,covid-19} |
- orthanc | 100 | {imaging,covid-19,practice} |
+ dcmtk | 181 | {imaging,covid-19} |
+ orthanc | 101 | {imaging,covid-19,practice} |
orthanc-wsi | 54 | {imaging,covid-19,laboratory,oncology,practice,his} |
htsjdk | 32 | {bio-dev} |
- nipype | 31 | {imaging,imaging-dev} |
- gdcm | 28 | {imaging-dev} |
+ nipype | 30 | {imaging,imaging-dev} |
+ gdcm | 27 | {imaging-dev} |
amide | 26 | {imaging} |
dicom3tools | 25 | {imaging} |
mrtrix3 | 24 | {imaging} |
- openslide | 24 | {imaging} |
- dicomscope | 22 | {imaging} |
- invesalius | 20 | {imaging} |
- odin | 18 | {imaging-dev,imaging} |
- dcm2niix | 15 | {imaging} |
- minc-tools | 15 | {imaging} |
- ngs-sdk | 14 | {bio-dev} |
+ dicomscope | 21 | {imaging} |
+ openslide | 20 | {imaging} |
+ invesalius | 19 | {imaging} |
+ odin | 17 | {imaging-dev,imaging} |
+ dcm2niix | 14 | {imaging} |
+ minc-tools | 14 | {imaging} |
orthanc-webviewer | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
- gdcm | 12 | {covid-19,imaging} |
+ ngs-sdk | 13 | {bio-dev} |
gnumed-server | 12 | {covid-19,practice} |
- adun.app | 11 | {bio} |
- dicomnifti | 11 | {imaging} |
+ gdcm | 11 | {covid-19,imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
- nifticlib | 11 | {imaging} |
- pixelmed | 11 | {imaging} |
- nifti2dicom | 10 | {imaging} |
- salmon | 10 | {covid-19,bio} |
- mia | 9 | {imaging} |
- ngs-sdk | 9 | {bio-dev} |
- plastimatch | 8 | {imaging} |
- jebl2 | 7 | {bio-dev} |
- king | 7 | {imaging,typesetting} |
- lagan | 7 | {bio} |
+ dicomnifti | 10 | {imaging} |
+ nifticlib | 10 | {imaging} |
+ pixelmed | 10 | {imaging} |
+ adun.app | 9 | {bio} |
+ nifti2dicom | 9 | {imaging} |
+ ngs-sdk | 8 | {bio-dev} |
+ salmon | 8 | {covid-19,bio} |
libminc | 7 | {imaging-dev} |
+ mia | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
- nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
oscar | 7 | {tools,data,practice} |
- treeview | 7 | {bio,bio-phylogeny} |
- biojava-live | 6 | {bio-dev} |
+ plastimatch | 7 | {imaging} |
+ king | 6 | {imaging,typesetting} |
+ lagan | 6 | {bio} |
+ nifti2dicom | 6 | {imaging} |
orthanc-postgresql | 6 | {imaging} |
- sight | 6 | {imaging} |
bart-view | 5 | {imaging} |
- fsm-lite | 5 | {bio} |
- libncl | 5 | {bio} |
- librdp-taxonomy-tree-java | 5 | {bio-dev} |
- librg-utils-perl | 5 | {bio} |
- melting | 5 | {bio,cloud} |
+ jebl2 | 5 | {bio-dev} |
nifticlib | 5 | {imaging-dev} |
orthanc-gdcm | 5 | {imaging} |
- phyutility | 5 | {cloud,bio} |
- piler | 5 | {bio} |
- rdp-classifier | 5 | {bio} |
- runcircos-gui | 5 | {bio} |
- saint | 5 | {bio} |
- stacks | 5 | {bio} |
- anfo | 4 | {bio,cloud} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- clonalorigin | 4 | {bio} |
+ orthanc-mysql | 5 | {imaging} |
+ treeview | 5 | {bio,bio-phylogeny} |
+ biojava-live | 4 | {bio-dev} |
dicompyler | 4 | {oncology} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {bio,cloud} |
- embassy-domsearch | 4 | {cloud,bio} |
- fastml | 4 | {bio} |
- gatb-core | 4 | {bio} |
getdata | 4 | {bio} |
- ghmm | 4 | {bio} |
- ipig | 4 | {bio} |
- jellyfish1 | 4 | {bio} |
- lamarc | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
- mauve-aligner | 4 | {bio} |
- metaphlan2 | 4 | {bio} |
- microbegps | 4 | {bio} |
- orthanc-mysql | 4 | {imaging} |
- placnet | 4 | {bio} |
- proalign | 4 | {bio,bio-phylogeny} |
- rtax | 4 | {cloud,bio} |
- sibsim4 | 4 | {cloud,bio} |
- spread-phy | 4 | {bio-phylogeny,bio} |
- assemblytics | 3 | {bio} |
- bio-tradis | 3 | {bio-dev,bio} |
- bitseq | 3 | {bio} |
+ libncl | 4 | {bio} |
+ librg-utils-perl | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
+ anfo | 3 | {bio,cloud} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
brig | 3 | {bio} |
- canu | 3 | {bio} |
cat-bat | 3 | {bio,covid-19} |
- clonalframeml | 3 | {bio,covid-19} |
- delly | 3 | {covid-19,bio} |
+ clonalorigin | 3 | {bio} |
elastix | 3 | {imaging} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {bio,cloud} |
emboss-explorer | 3 | {bio} |
- hinge | 3 | {bio} |
- jmodeltest | 3 | {bio-phylogeny,bio} |
- libpal-java | 3 | {bio-dev} |
+ fsm-lite | 3 | {bio} |
+ ghmm | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ lamarc | 3 | {bio} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- mhap | 3 | {bio,bio-ngs} |
+ melting | 3 | {bio,cloud} |
ncbi-vdb | 3 | {bio-dev} |
- obitools | 3 | {bio} |
opencfu | 3 | {laboratory} |
openslide | 3 | {imaging-dev} |
orthanc-python | 3 | {covid-19} |
- phast | 3 | {bio} |
+ phyutility | 3 | {cloud,bio} |
+ piler | 3 | {bio} |
plasmidseeker | 3 | {bio} |
pymia | 3 | {imaging-dev} |
- rambo-k | 3 | {bio} |
- rdp-alignment | 3 | {bio} |
- sga | 3 | {bio} |
- sprai | 3 | {bio} |
- staden | 3 | {bio} |
- suitename | 3 | {bio} |
- tracetuner | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
+ rdp-classifier | 3 | {bio} |
+ saint | 3 | {bio} |
+ stacks | 3 | {bio} |
arden | 2 | {cloud,bio} |
+ assemblytics | 2 | {bio} |
bambamc | 2 | {bio-dev} |
- biomaj3-cli | 2 | {cloud} |
+ bitseq | 2 | {bio} |
blimps | 2 | {bio} |
+ canu | 2 | {bio} |
+ clonalframeml | 2 | {bio,covid-19} |
+ delly | 2 | {covid-19,bio} |
dextractor | 2 | {covid-19,bio} |
+ embassy-domsearch | 2 | {cloud,bio} |
+ fastml | 2 | {bio} |
gatb-core | 2 | {bio-dev} |
+ gatb-core | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
- libbio-mage-utils-perl | 2 | {bio-dev} |
+ hinge | 2 | {bio} |
+ ipig | 2 | {bio} |
libbpp-core | 2 | {bio-dev} |
libbpp-phyl | 2 | {bio-dev} |
libbpp-phyl-omics | 2 | {bio-dev} |
@@ -136,40 +111,64 @@ Last-Update: Sat, 06 Nov 2021 01:42:03 +0000
libqes | 2 | {bio-dev} |
libseqlib | 2 | {bio-dev} |
libstatgen | 2 | {bio-dev} |
+ mauve-aligner | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
+ mhap | 2 | {bio,bio-ngs} |
+ microbegps | 2 | {bio} |
+ obitools | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
parallel-fastq-dump | 2 | {covid-19} |
pbcopper | 2 | {bio-dev} |
pbseqlib | 2 | {bio-dev} |
- pscan-chip | 2 | {bio} |
- qcumber | 2 | {bio} |
+ phast | 2 | {bio} |
+ placnet | 2 | {bio} |
+ proalign | 2 | {bio,bio-phylogeny} |
+ rambo-k | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
+ sibsim4 | 2 | {cloud,bio} |
sift | 2 | {bio} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
+ spread-phy | 2 | {bio-phylogeny,bio} |
srf | 2 | {bio-dev} |
- surankco | 2 | {bio} |
- tvc | 2 | {bio} |
+ tracetuner | 2 | {bio} |
varna | 2 | {bio} |
+ zalign | 2 | {cloud,bio} |
atropos | 1 | {bio} |
+ biomaj3-cli | 1 | {cloud} |
+ bio-tradis | 1 | {bio-dev,bio} |
bustools | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
emmax | 1 | {bio} |
htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio,bio-dev} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
kmerresistance | 1 | {bio} |
libbigwig | 1 | {bio-dev} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libncl | 1 | {bio-dev} |
+ libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {bio-phylogeny,covid-19,bio} |
+ pscan-chip | 1 | {bio} |
+ qcumber | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ sga | 1 | {bio} |
shovill | 1 | {covid-19,bio} |
skesa | 1 | {bio} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
+ sprai | 1 | {bio} |
+ staden | 1 | {bio} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
tophat-recondition | 1 | {covid-19,bio} |
+ tvc | 1 | {bio} |
acedb | 0 | {cloud,bio} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -209,5 +208,5 @@ Last-Update: Sat, 06 Nov 2021 01:42:03 +0000
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
sight | -1 | {imaging-dev} |
-(239 rows)
+(238 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bd809d16a51e7f47b7fc8b42065beaaae12c55e7
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bd809d16a51e7f47b7fc8b42065beaaae12c55e7
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