[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Sun Nov 7 13:42:26 GMT 2021



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
2520eee3 by Andreas Tille at 2021-11-07T13:42:22+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,2 +1,211 @@
-Last-Update: Sun, 07 Nov 2021 01:42:04 +0000
+Last-Update: Sun, 07 Nov 2021 13:42:04 +0000
+
+ Source                        | Vote   |     Tasks                                           |                                 Tags                                 
+-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
+ dcmtk                         |    181 | {imaging,covid-19}                                  | 
+ orthanc                       |    102 | {imaging,covid-19,practice}                         | 
+ orthanc-wsi                   |     54 | {imaging,covid-19,laboratory,oncology,practice,his} | 
+ htsjdk                        |     32 | {bio-dev}                                           | 
+ nipype                        |     30 | {imaging,imaging-dev}                               | 
+ gdcm                          |     27 | {imaging-dev}                                       | 
+ amide                         |     26 | {imaging}                                           | 
+ dicom3tools                   |     25 | {imaging}                                           | 
+ mrtrix3                       |     24 | {imaging}                                           | 
+ dicomscope                    |     21 | {imaging}                                           | 
+ openslide                     |     20 | {imaging}                                           | 
+ invesalius                    |     19 | {imaging}                                           | 
+ odin                          |     16 | {imaging-dev,imaging}                               | 
+ minc-tools                    |     14 | {imaging}                                           | 
+ ngs-sdk                       |     14 | {bio-dev}                                           | 
+ orthanc-webviewer             |     14 | {imaging}                                           | 
+ dcm2niix                      |     13 | {imaging}                                           | 
+ gdcm                          |     13 | {imaging-dev}                                       | 
+ gdcm                          |     12 | {covid-19,imaging}                                  | 
+ gnumed-server                 |     12 | {covid-19,practice}                                 | 
+ insighttoolkit4               |     11 | {imaging-dev}                                       | 
+ dicomnifti                    |     10 | {imaging}                                           | 
+ nifticlib                     |     10 | {imaging}                                           | 
+ pixelmed                      |     10 | {imaging}                                           | 
+ adun.app                      |      9 | {bio}                                               | 
+ nifti2dicom                   |      9 | {imaging}                                           | 
+ ngs-sdk                       |      8 | {bio-dev}                                           | 
+ salmon                        |      8 | {covid-19,bio}                                      | 
+ libminc                       |      7 | {imaging-dev}                                       | 
+ mia                           |      7 | {imaging}                                           | 
+ ngs-sdk                       |      7 | {bio-dev}                                           | 
+ orthanc-dicomweb              |      7 | {covid-19,imaging}                                  | 
+ oscar                         |      7 | {tools,data,practice}                               | 
+ plastimatch                   |      7 | {imaging}                                           | 
+ king                          |      6 | {imaging,typesetting}                               | 
+ lagan                         |      6 | {bio}                                               | 
+ nifti2dicom                   |      6 | {imaging}                                           | 
+ orthanc-postgresql            |      6 | {imaging}                                           | 
+ bart-view                     |      5 | {imaging}                                           | 
+ jebl2                         |      5 | {bio-dev}                                           | 
+ nifticlib                     |      5 | {imaging-dev}                                       | 
+ orthanc-gdcm                  |      5 | {imaging}                                           | 
+ orthanc-mysql                 |      5 | {imaging}                                           | 
+ treeview                      |      5 | {bio,bio-phylogeny}                                 | 
+ biojava-live                  |      4 | {bio-dev}                                           | 
+ dicompyler                    |      4 | {oncology}                                          | 
+ getdata                       |      4 | {bio}                                               | 
+ libdivsufsort                 |      4 | {bio-dev}                                           | 
+ libncl                        |      4 | {bio}                                               | 
+ librg-utils-perl              |      4 | {bio}                                               | 
+ runcircos-gui                 |      4 | {bio}                                               | 
+ anfo                          |      3 | {bio,cloud}                                         | 
+ beast-mcmc                    |      3 | {bio-phylogeny,bio}                                 | 
+ brig                          |      3 | {bio}                                               | 
+ cat-bat                       |      3 | {bio,covid-19}                                      | 
+ clonalorigin                  |      3 | {bio}                                               | 
+ elastix                       |      3 | {imaging}                                           | 
+ embassy-domainatrix           |      3 | {cloud,bio}                                         | 
+ embassy-domalign              |      3 | {bio,cloud}                                         | 
+ emboss-explorer               |      3 | {bio}                                               | 
+ fsm-lite                      |      3 | {bio}                                               | 
+ ghmm                          |      3 | {bio}                                               | 
+ jellyfish1                    |      3 | {bio}                                               | 
+ lamarc                        |      3 | {bio}                                               | 
+ librdp-taxonomy-tree-java     |      3 | {bio-dev}                                           | 
+ libsbml                       |      3 | {bio-dev}                                           | 
+ melting                       |      3 | {bio,cloud}                                         | 
+ ncbi-vdb                      |      3 | {bio-dev}                                           | 
+ opencfu                       |      3 | {laboratory}                                        | 
+ openslide                     |      3 | {imaging-dev}                                       | 
+ orthanc-python                |      3 | {covid-19}                                          | 
+ phyutility                    |      3 | {cloud,bio}                                         | 
+ piler                         |      3 | {bio}                                               | 
+ plasmidseeker                 |      3 | {bio}                                               | 
+ pymia                         |      3 | {imaging-dev}                                       | 
+ rdp-classifier                |      3 | {bio}                                               | 
+ saint                         |      3 | {bio}                                               | 
+ stacks                        |      3 | {bio}                                               | 
+ arden                         |      2 | {cloud,bio}                                         | 
+ assemblytics                  |      2 | {bio}                                               | 
+ bambamc                       |      2 | {bio-dev}                                           | 
+ bitseq                        |      2 | {bio}                                               | 
+ blimps                        |      2 | {bio}                                               | 
+ canu                          |      2 | {bio}                                               | 
+ clonalframeml                 |      2 | {bio,covid-19}                                      | 
+ delly                         |      2 | {covid-19,bio}                                      | 
+ dextractor                    |      2 | {covid-19,bio}                                      | 
+ embassy-domsearch             |      2 | {cloud,bio}                                         | 
+ fastml                        |      2 | {bio}                                               | 
+ gatb-core                     |      2 | {bio-dev}                                           | 
+ gatb-core                     |      2 | {bio}                                               | 
+ gifticlib                     |      2 | {imaging-dev}                                       | 
+ hinge                         |      2 | {bio}                                               | 
+ ipig                          |      2 | {bio}                                               | 
+ libbpp-core                   |      2 | {bio-dev}                                           | 
+ libbpp-phyl                   |      2 | {bio-dev}                                           | 
+ libbpp-phyl-omics             |      2 | {bio-dev}                                           | 
+ libbpp-popgen                 |      2 | {bio-dev}                                           | 
+ libbpp-raa                    |      2 | {bio-dev}                                           | 
+ libbpp-seq                    |      2 | {bio-dev}                                           | 
+ libbpp-seq-omics              |      2 | {bio-dev}                                           | 
+ libgenome                     |      2 | {bio-dev}                                           | 
+ libgkarrays                   |      2 | {bio-dev}                                           | 
+ libhmsbeagle                  |      2 | {bio-dev}                                           | 
+ libmems                       |      2 | {bio-dev}                                           | 
+ libmuscle                     |      2 | {bio-dev}                                           | 
+ libqes                        |      2 | {bio-dev}                                           | 
+ libseqlib                     |      2 | {bio-dev}                                           | 
+ libstatgen                    |      2 | {bio-dev}                                           | 
+ mauve-aligner                 |      2 | {bio}                                               | 
+ metaphlan2                    |      2 | {bio}                                               | 
+ mhap                          |      2 | {bio,bio-ngs}                                       | 
+ microbegps                    |      2 | {bio}                                               | 
+ obitools                      |      2 | {bio}                                               | 
+ papyrus                       |      2 | {imaging-dev}                                       | 
+ pbcopper                      |      2 | {bio-dev}                                           | 
+ pbseqlib                      |      2 | {bio-dev}                                           | 
+ phast                         |      2 | {bio}                                               | 
+ placnet                       |      2 | {bio}                                               | 
+ proalign                      |      2 | {bio,bio-phylogeny}                                 | 
+ rambo-k                       |      2 | {bio}                                               | 
+ rtax                          |      2 | {cloud,bio}                                         | 
+ sibsim4                       |      2 | {cloud,bio}                                         | 
+ sift                          |      2 | {bio}                                               | 
+ spread-phy                    |      2 | {bio-phylogeny,bio}                                 | 
+ srf                           |      2 | {bio-dev}                                           | 
+ tracetuner                    |      2 | {bio}                                               | 
+ zalign                        |      2 | {cloud,bio}                                         | 
+ atropos                       |      1 | {bio}                                               | 
+ biomaj3-cli                   |      1 | {cloud}                                             | 
+ bio-tradis                    |      1 | {bio-dev,bio}                                       | 
+ ctn                           |      1 | {imaging-dev}                                       | 
+ cufflinks                     |      1 | {bio,cloud}                                         | 
+ emmax                         |      1 | {bio}                                               | 
+ htscodecs                     |      1 | {covid-19,bio-dev}                                  | 
+ intake                        |      1 | {bio,bio-dev}                                       | 
+ jmodeltest                    |      1 | {bio-phylogeny,bio}                                 | 
+ kmerresistance                |      1 | {bio}                                               | 
+ libbigwig                     |      1 | {bio-dev}                                           | 
+ libbio-mage-utils-perl        |      1 | {bio-dev}                                           | 
+ libchado-perl                 |      1 | {bio-dev}                                           | 
+ libncl                        |      1 | {bio-dev}                                           | 
+ libpal-java                   |      1 | {bio-dev}                                           | 
+ libvistaio                    |      1 | {imaging-dev}                                       | 
+ parallel-fastq-dump           |      1 | {covid-19}                                          | 
+ pigx-rnaseq                   |      1 | {covid-19,bio}                                      | 
+ pique                         |      1 | {bio}                                               | 
+ plasmidid                     |      1 | {covid-19,bio}                                      | 
+ pplacer                       |      1 | {bio-phylogeny,covid-19,bio}                        | 
+ pscan-chip                    |      1 | {bio}                                               | 
+ qcumber                       |      1 | {bio}                                               | 
+ rdp-alignment                 |      1 | {bio}                                               | 
+ sga                           |      1 | {bio}                                               | 
+ shovill                       |      1 | {covid-19,bio}                                      | 
+ skesa                         |      1 | {bio}                                               | 
+ soapaligner                   |      1 | {bio}                                               | 
+ soapsnp                       |      1 | {bio}                                               | 
+ spaln                         |      1 | {bio,covid-19}                                      | 
+ sprai                         |      1 | {bio}                                               | 
+ staden                        |      1 | {bio}                                               | 
+ suitename                     |      1 | {bio}                                               | 
+ surankco                      |      1 | {bio}                                               | 
+ thesias                       |      1 | {bio,covid-19}                                      | 
+ tophat-recondition            |      1 | {covid-19,bio}                                      | 
+ tvc                           |      1 | {bio}                                               | 
+ varna                         |      1 | {bio}                                               | 
+ acedb                         |      0 | {cloud,bio}                                         | 
+ biojava4-live                 |      0 | {bio-dev}                                           | 
+ biosyntax                     |      0 | {bio}                                               | 
+ bmtk                          |      0 | {psychology}                                        | 
+ camp                          |      0 | {imaging-dev}                                       | 
+ eegdev                        |      0 | {imaging-dev}                                       | 
+ fis-gtm                       |      0 | {his}                                               | 
+ libbiod                       |      0 | {bio-dev}                                           | 
+ libbioparser-dev              |      0 | {bio-dev}                                           | 
+ libctapimkt                   |      0 | {practice}                                          | 
+ libics                        |      0 | {covid-19,imaging-dev}                              | 
+ libjloda-java                 |      0 | {bio-dev}                                           | 
+ libmaus2                      |      0 | {covid-19,bio-dev}                                  | 
+ libmialm                      |      0 | {imaging-dev}                                       | 
+ libpsortb                     |      0 | {bio-dev}                                           | 
+ libxdf                        |      0 | {imaging-dev}                                       | 
+ metastudent-data              |      0 | {bio}                                               | 
+ metastudent-data-2            |      0 | {bio}                                               | 
+ mia                           |      0 | {imaging-dev}                                       | 
+ miaviewit                     |      0 | {imaging-dev}                                       | 
+ milib                         |      0 | {bio-dev,covid-19}                                  | 
+ nifticlib                     |      0 | {imaging-dev}                                       | 
+ opensurgsim                   |      0 | {imaging-dev}                                       | 
+ orthanc-imagej                |      0 | {imaging}                                           | 
+ pbseqlib                      |      0 | {bio-dev}                                           | 
+ python-seqcluster             |      0 | {bio}                                               | 
+ python-seqcluster             |      0 | {bio-dev,covid-19}                                  | 
+ python-wdlparse               |      0 | {bio-dev}                                           | 
+ resfinder-db                  |      0 | {bio}                                               | 
+ sbmltoolbox                   |      0 | {bio-dev}                                           | 
+ seq-gen                       |      0 | {bio}                                               | 
+ simpleitk                     |      0 | {imaging-dev}                                       | 
+ smrtanalysis                  |      0 | {covid-19,bio}                                      | 
+ trace2dbest                   |      0 | {bio}                                               | 
+ varscan                       |      0 | {bio,covid-19}                                      | 
+ vienna-rna                    |      0 | {bio,covid-19}                                      | 
+ xdffileio                     |      0 | {imaging-dev}                                       | 
+ mssstest                      |     -1 | {tools}                                             | 
+ sight                         |     -1 | {imaging-dev}                                       | 
+(237 rows)
 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2520eee3c37282d17f5a266e0726b8dad4fcd114

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2520eee3c37282d17f5a266e0726b8dad4fcd114
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