Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
f2d2a524 by Andreas Tille at 2021-11-08T13:42:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,86 +1,87 @@
-Last-Update: Mon, 08 Nov 2021 01:42:04 +0000
+Last-Update: Mon, 08 Nov 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 181 | {imaging,covid-19} |
- orthanc | 102 | {imaging,covid-19,practice} |
- orthanc-wsi | 54 | {imaging,covid-19,laboratory,oncology,practice,his} |
- htsjdk | 32 | {bio-dev} |
- nipype | 30 | {imaging,imaging-dev} |
- gdcm | 27 | {imaging-dev} |
- amide | 26 | {imaging} |
+ dcmtk | 182 | {imaging,covid-19} |
+ orthanc | 102 | {practice,covid-19,imaging} |
+ orthanc-wsi | 54 | {oncology,his,covid-19,imaging,practice,laboratory} |
+ htsjdk | 34 | {bio-dev} |
+ nipype | 30 | {imaging-dev,imaging} |
+ gdcm | 28 | {imaging-dev} |
+ amide | 25 | {imaging} |
dicom3tools | 25 | {imaging} |
mrtrix3 | 24 | {imaging} |
- dicomscope | 21 | {imaging} |
- openslide | 20 | {imaging} |
+ dicomscope | 23 | {imaging} |
invesalius | 19 | {imaging} |
- odin | 16 | {imaging-dev,imaging} |
- minc-tools | 14 | {imaging} |
- ngs-sdk | 14 | {bio-dev} |
+ openslide | 19 | {imaging} |
+ ngs-sdk | 17 | {bio-dev} |
+ odin | 16 | {imaging,imaging-dev} |
+ gdcm | 14 | {imaging-dev} |
orthanc-webviewer | 14 | {imaging} |
dcm2niix | 13 | {imaging} |
- gdcm | 13 | {imaging-dev} |
- gdcm | 12 | {covid-19,imaging} |
- gnumed-server | 12 | {covid-19,practice} |
- insighttoolkit4 | 11 | {imaging-dev} |
+ gnumed-server | 13 | {covid-19,practice} |
+ minc-tools | 13 | {imaging} |
+ gdcm | 12 | {imaging,covid-19} |
+ insighttoolkit4 | 12 | {imaging-dev} |
dicomnifti | 10 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
nifticlib | 10 | {imaging} |
pixelmed | 10 | {imaging} |
adun.app | 9 | {bio} |
nifti2dicom | 9 | {imaging} |
- ngs-sdk | 8 | {bio-dev} |
- salmon | 8 | {covid-19,bio} |
+ salmon | 9 | {bio,covid-19} |
libminc | 7 | {imaging-dev} |
mia | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
- oscar | 7 | {tools,data,practice} |
+ oscar | 7 | {practice,tools,data} |
plastimatch | 7 | {imaging} |
- king | 6 | {imaging,typesetting} |
+ king | 6 | {typesetting,imaging} |
lagan | 6 | {bio} |
nifti2dicom | 6 | {imaging} |
+ nifticlib | 6 | {imaging-dev} |
orthanc-postgresql | 6 | {imaging} |
bart-view | 5 | {imaging} |
jebl2 | 5 | {bio-dev} |
- nifticlib | 5 | {imaging-dev} |
orthanc-gdcm | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
- treeview | 5 | {bio,bio-phylogeny} |
+ treeview | 5 | {bio-phylogeny,bio} |
biojava-live | 4 | {bio-dev} |
dicompyler | 4 | {oncology} |
getdata | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libncl | 4 | {bio} |
librg-utils-perl | 4 | {bio} |
+ melting | 4 | {cloud,bio} |
runcircos-gui | 4 | {bio} |
- anfo | 3 | {bio,cloud} |
+ anfo | 3 | {cloud,bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
brig | 3 | {bio} |
cat-bat | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
elastix | 3 | {imaging} |
embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {bio,cloud} |
+ embassy-domalign | 3 | {cloud,bio} |
emboss-explorer | 3 | {bio} |
fsm-lite | 3 | {bio} |
ghmm | 3 | {bio} |
+ gifticlib | 3 | {imaging-dev} |
jellyfish1 | 3 | {bio} |
lamarc | 3 | {bio} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- melting | 3 | {bio,cloud} |
ncbi-vdb | 3 | {bio-dev} |
opencfu | 3 | {laboratory} |
openslide | 3 | {imaging-dev} |
orthanc-python | 3 | {covid-19} |
+ papyrus | 3 | {imaging-dev} |
phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
plasmidseeker | 3 | {bio} |
pymia | 3 | {imaging-dev} |
- rdp-classifier | 3 | {bio} |
saint | 3 | {bio} |
+ srf | 3 | {bio-dev} |
stacks | 3 | {bio} |
- arden | 2 | {cloud,bio} |
+ arden | 2 | {bio,cloud} |
assemblytics | 2 | {bio} |
bambamc | 2 | {bio-dev} |
bitseq | 2 | {bio} |
@@ -89,11 +90,10 @@ Last-Update: Mon, 08 Nov 2021 01:42:04 +0000
clonalframeml | 2 | {bio,covid-19} |
delly | 2 | {covid-19,bio} |
dextractor | 2 | {covid-19,bio} |
- embassy-domsearch | 2 | {cloud,bio} |
+ embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio-dev} |
gatb-core | 2 | {bio} |
- gifticlib | 2 | {imaging-dev} |
hinge | 2 | {bio} |
ipig | 2 | {bio} |
libbpp-core | 2 | {bio-dev} |
@@ -109,36 +109,37 @@ Last-Update: Mon, 08 Nov 2021 01:42:04 +0000
libmems | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
libqes | 2 | {bio-dev} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
libseqlib | 2 | {bio-dev} |
libstatgen | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
metaphlan2 | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
+ mhap | 2 | {bio-ngs,bio} |
microbegps | 2 | {bio} |
obitools | 2 | {bio} |
- papyrus | 2 | {imaging-dev} |
pbcopper | 2 | {bio-dev} |
pbseqlib | 2 | {bio-dev} |
phast | 2 | {bio} |
placnet | 2 | {bio} |
proalign | 2 | {bio,bio-phylogeny} |
rambo-k | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
rtax | 2 | {cloud,bio} |
sibsim4 | 2 | {cloud,bio} |
sift | 2 | {bio} |
- spread-phy | 2 | {bio-phylogeny,bio} |
- srf | 2 | {bio-dev} |
+ spread-phy | 2 | {bio,bio-phylogeny} |
+ staden | 2 | {bio} |
tracetuner | 2 | {bio} |
zalign | 2 | {cloud,bio} |
atropos | 1 | {bio} |
biomaj3-cli | 1 | {cloud} |
- bio-tradis | 1 | {bio-dev,bio} |
+ bio-tradis | 1 | {bio,bio-dev} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
emmax | 1 | {bio} |
htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio,bio-dev} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
+ jmodeltest | 1 | {bio,bio-phylogeny} |
kmerresistance | 1 | {bio} |
libbigwig | 1 | {bio-dev} |
libbio-mage-utils-perl | 1 | {bio-dev} |
@@ -147,28 +148,27 @@ Last-Update: Mon, 08 Nov 2021 01:42:04 +0000
libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
- pigx-rnaseq | 1 | {covid-19,bio} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
pique | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
- pplacer | 1 | {bio-phylogeny,covid-19,bio} |
+ pplacer | 1 | {bio,bio-phylogeny,covid-19} |
pscan-chip | 1 | {bio} |
qcumber | 1 | {bio} |
rdp-alignment | 1 | {bio} |
sga | 1 | {bio} |
- shovill | 1 | {covid-19,bio} |
+ shovill | 1 | {bio,covid-19} |
skesa | 1 | {bio} |
soapaligner | 1 | {bio} |
soapsnp | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
+ spaln | 1 | {covid-19,bio} |
sprai | 1 | {bio} |
- staden | 1 | {bio} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
- thesias | 1 | {bio,covid-19} |
- tophat-recondition | 1 | {covid-19,bio} |
+ thesias | 1 | {covid-19,bio} |
+ tophat-recondition | 1 | {bio,covid-19} |
tvc | 1 | {bio} |
varna | 1 | {bio} |
- acedb | 0 | {cloud,bio} |
+ acedb | 0 | {bio,cloud} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
@@ -178,7 +178,7 @@ Last-Update: Mon, 08 Nov 2021 01:42:04 +0000
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libctapimkt | 0 | {practice} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {covid-19,bio-dev} |
libmialm | 0 | {imaging-dev} |
@@ -193,8 +193,8 @@ Last-Update: Mon, 08 Nov 2021 01:42:04 +0000
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbseqlib | 0 | {bio-dev} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -202,7 +202,7 @@ Last-Update: Mon, 08 Nov 2021 01:42:04 +0000
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {covid-19,bio} |
trace2dbest | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
+ varscan | 0 | {covid-19,bio} |
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f2d2a5247ccbe692549c950a90ca8800234c68cd
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f2d2a5247ccbe692549c950a90ca8800234c68cd
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20211108/b0b1d03b/attachment-0001.htm>