Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
61105601 by Andreas Tille at 2021-11-10T13:42:24+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,89 +1,86 @@
-Last-Update: Wed, 10 Nov 2021 01:42:04 +0000
+Last-Update: Wed, 10 Nov 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {imaging,covid-19} |
- orthanc | 102 | {practice,covid-19,imaging} |
- orthanc-wsi | 54 | {oncology,his,covid-19,imaging,practice,laboratory} |
+ dcmtk | 179 | {imaging,covid-19} |
+ orthanc | 101 | {practice,covid-19,imaging} |
+ orthanc-wsi | 56 | {oncology,his,covid-19,imaging,practice,laboratory} |
htsjdk | 34 | {bio-dev} |
nipype | 30 | {imaging-dev,imaging} |
- amide | 27 | {imaging} |
- gdcm | 27 | {imaging-dev} |
- dicom3tools | 25 | {imaging} |
+ amide | 28 | {imaging} |
+ gdcm | 28 | {imaging-dev} |
+ dicom3tools | 27 | {imaging} |
mrtrix3 | 24 | {imaging} |
openslide | 23 | {imaging} |
dicomscope | 22 | {imaging} |
invesalius | 19 | {imaging} |
- ngs-sdk | 18 | {bio-dev} |
- odin | 16 | {imaging,imaging-dev} |
- dcm2niix | 14 | {imaging} |
+ ngs-sdk | 19 | {bio-dev} |
+ odin | 17 | {imaging,imaging-dev} |
+ dcm2niix | 15 | {imaging} |
gdcm | 14 | {imaging-dev} |
orthanc-webviewer | 14 | {imaging} |
gdcm | 13 | {imaging,covid-19} |
gnumed-server | 13 | {covid-19,practice} |
+ insighttoolkit4 | 13 | {imaging-dev} |
minc-tools | 13 | {imaging} |
- insighttoolkit4 | 12 | {imaging-dev} |
- dicomnifti | 10 | {imaging} |
+ dicomnifti | 11 | {imaging} |
+ nifticlib | 11 | {imaging} |
ngs-sdk | 10 | {bio-dev} |
- nifticlib | 10 | {imaging} |
- pixelmed | 10 | {imaging} |
+ salmon | 10 | {bio,covid-19} |
adun.app | 9 | {bio} |
nifti2dicom | 9 | {imaging} |
- salmon | 9 | {bio,covid-19} |
+ pixelmed | 9 | {imaging} |
+ libminc | 8 | {imaging-dev} |
+ ngs-sdk | 8 | {bio-dev} |
+ nifticlib | 8 | {imaging-dev} |
+ orthanc-dicomweb | 8 | {covid-19,imaging} |
lagan | 7 | {bio} |
- libminc | 7 | {imaging-dev} |
mia | 7 | {imaging} |
- ngs-sdk | 7 | {bio-dev} |
- nifticlib | 7 | {imaging-dev} |
- orthanc-dicomweb | 7 | {covid-19,imaging} |
+ nifti2dicom | 7 | {imaging} |
oscar | 7 | {practice,tools,data} |
plastimatch | 7 | {imaging} |
king | 6 | {typesetting,imaging} |
- nifti2dicom | 6 | {imaging} |
orthanc-postgresql | 6 | {imaging} |
bart-view | 5 | {imaging} |
+ biojava-live | 5 | {bio-dev} |
jebl2 | 5 | {bio-dev} |
libncl | 5 | {bio} |
- orthanc-gdcm | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
treeview | 5 | {bio-phylogeny,bio} |
- biojava-live | 4 | {bio-dev} |
- dicompyler | 4 | {oncology} |
getdata | 4 | {bio} |
- libdivsufsort | 4 | {bio-dev} |
+ gifticlib | 4 | {imaging-dev} |
librg-utils-perl | 4 | {bio} |
melting | 4 | {cloud,bio} |
openslide | 4 | {imaging-dev} |
+ orthanc-gdcm | 4 | {imaging} |
+ papyrus | 4 | {imaging-dev} |
+ pymia | 4 | {imaging-dev} |
runcircos-gui | 4 | {bio} |
+ srf | 4 | {bio-dev} |
+ stacks | 4 | {bio} |
anfo | 3 | {cloud,bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
brig | 3 | {bio} |
cat-bat | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
+ dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
embassy-domainatrix | 3 | {cloud,bio} |
embassy-domalign | 3 | {cloud,bio} |
emboss-explorer | 3 | {bio} |
fsm-lite | 3 | {bio} |
ghmm | 3 | {bio} |
- gifticlib | 3 | {imaging-dev} |
jellyfish1 | 3 | {bio} |
lamarc | 3 | {bio} |
+ libdivsufsort | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- ncbi-vdb | 3 | {bio-dev} |
- opencfu | 3 | {laboratory} |
orthanc-python | 3 | {covid-19} |
- papyrus | 3 | {imaging-dev} |
phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
plasmidseeker | 3 | {bio} |
- pymia | 3 | {imaging-dev} |
saint | 3 | {bio} |
- srf | 3 | {bio-dev} |
- stacks | 3 | {bio} |
arden | 2 | {bio,cloud} |
assemblytics | 2 | {bio} |
- bambamc | 2 | {bio-dev} |
bitseq | 2 | {bio} |
blimps | 2 | {bio} |
canu | 2 | {bio} |
@@ -93,32 +90,16 @@ Last-Update: Wed, 10 Nov 2021 01:42:04 +0000
embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
- gatb-core | 2 | {bio-dev} |
hinge | 2 | {bio} |
ipig | 2 | {bio} |
- libbpp-core | 2 | {bio-dev} |
- libbpp-phyl | 2 | {bio-dev} |
- libbpp-phyl-omics | 2 | {bio-dev} |
- libbpp-popgen | 2 | {bio-dev} |
- libbpp-raa | 2 | {bio-dev} |
- libbpp-seq | 2 | {bio-dev} |
- libbpp-seq-omics | 2 | {bio-dev} |
- libgenome | 2 | {bio-dev} |
- libgkarrays | 2 | {bio-dev} |
- libhmsbeagle | 2 | {bio-dev} |
- libmems | 2 | {bio-dev} |
- libmuscle | 2 | {bio-dev} |
- libqes | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
- libseqlib | 2 | {bio-dev} |
- libstatgen | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
metaphlan2 | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
microbegps | 2 | {bio} |
+ ncbi-vdb | 2 | {bio-dev} |
obitools | 2 | {bio} |
- pbcopper | 2 | {bio-dev} |
- pbseqlib | 2 | {bio-dev} |
+ opencfu | 2 | {laboratory} |
phast | 2 | {bio} |
placnet | 2 | {bio} |
proalign | 2 | {bio,bio-phylogeny} |
@@ -131,22 +112,39 @@ Last-Update: Wed, 10 Nov 2021 01:42:04 +0000
tracetuner | 2 | {bio} |
zalign | 2 | {cloud,bio} |
atropos | 1 | {bio} |
+ bambamc | 1 | {bio-dev} |
biomaj3-cli | 1 | {cloud} |
bio-tradis | 1 | {bio,bio-dev} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
emmax | 1 | {bio} |
- htscodecs | 1 | {covid-19,bio-dev} |
+ gatb-core | 1 | {bio-dev} |
intake | 1 | {bio,bio-dev} |
jmodeltest | 1 | {bio,bio-phylogeny} |
kmerresistance | 1 | {bio} |
- libbigwig | 1 | {bio-dev} |
libbio-mage-utils-perl | 1 | {bio-dev} |
+ libbpp-core | 1 | {bio-dev} |
+ libbpp-phyl | 1 | {bio-dev} |
+ libbpp-phyl-omics | 1 | {bio-dev} |
+ libbpp-popgen | 1 | {bio-dev} |
+ libbpp-raa | 1 | {bio-dev} |
+ libbpp-seq | 1 | {bio-dev} |
+ libbpp-seq-omics | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
+ libgenome | 1 | {bio-dev} |
+ libgkarrays | 1 | {bio-dev} |
+ libhmsbeagle | 1 | {bio-dev} |
+ libmems | 1 | {bio-dev} |
+ libmuscle | 1 | {bio-dev} |
libncl | 1 | {bio-dev} |
libpal-java | 1 | {bio-dev} |
+ libqes | 1 | {bio-dev} |
+ libseqlib | 1 | {bio-dev} |
+ libstatgen | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
+ pbcopper | 1 | {bio-dev} |
+ pbseqlib | 1 | {bio-dev} |
pigx-rnaseq | 1 | {bio,covid-19} |
pique | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
@@ -175,6 +173,8 @@ Last-Update: Wed, 10 Nov 2021 01:42:04 +0000
camp | 0 | {imaging-dev} |
eegdev | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
+ htscodecs | 0 | {covid-19,bio-dev} |
+ libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libctapimkt | 0 | {practice} |
@@ -193,8 +193,8 @@ Last-Update: Wed, 10 Nov 2021 01:42:04 +0000
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/611056011fdf11e68faceb18ef15c635de3ead23
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/611056011fdf11e68faceb18ef15c635de3ead23
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