Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
3892759f by Andreas Tille at 2021-11-16T13:42:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,68 +1,67 @@
-Last-Update: Tue, 16 Nov 2021 01:42:04 +0000
+Last-Update: Tue, 16 Nov 2021 13:42:05 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 189 | {imaging,covid-19} |
- orthanc | 104 | {practice,covid-19,imaging} |
- orthanc-wsi | 58 | {oncology,his,covid-19,imaging,practice,laboratory} |
- htsjdk | 33 | {bio-dev} |
- nipype | 31 | {imaging-dev,imaging} |
+ orthanc | 104 | {covid-19,practice,imaging} |
+ orthanc-wsi | 59 | {his,oncology,covid-19,laboratory,imaging,practice} |
+ htsjdk | 32 | {bio-dev} |
+ nipype | 32 | {imaging-dev,imaging} |
+ amide | 27 | {imaging} |
gdcm | 27 | {imaging-dev} |
- amide | 25 | {imaging} |
- mrtrix3 | 25 | {imaging} |
- dicom3tools | 24 | {imaging} |
- dicomscope | 21 | {imaging} |
- ngs-sdk | 20 | {bio-dev} |
- openslide | 19 | {imaging} |
- invesalius | 18 | {imaging} |
- dcm2niix | 15 | {imaging} |
- odin | 15 | {imaging,imaging-dev} |
+ mrtrix3 | 27 | {imaging} |
+ dicom3tools | 26 | {imaging} |
+ dicomscope | 22 | {imaging} |
+ openslide | 21 | {imaging} |
+ ngs-sdk | 19 | {bio-dev} |
+ dcm2niix | 17 | {imaging} |
+ invesalius | 17 | {imaging} |
+ odin | 16 | {imaging,imaging-dev} |
orthanc-webviewer | 15 | {imaging} |
- gnumed-server | 14 | {covid-19,practice} |
+ gdcm | 14 | {imaging-dev} |
+ gnumed-server | 14 | {practice,covid-19} |
insighttoolkit4 | 14 | {imaging-dev} |
- gdcm | 13 | {imaging-dev} |
- gdcm | 12 | {imaging,covid-19} |
- minc-tools | 11 | {imaging} |
- ngs-sdk | 11 | {bio-dev} |
+ gdcm | 13 | {covid-19,imaging} |
+ minc-tools | 13 | {imaging} |
+ dicomnifti | 12 | {imaging} |
+ nifticlib | 11 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
+ nifti2dicom | 10 | {imaging} |
adun.app | 9 | {bio} |
- dicomnifti | 9 | {imaging} |
libminc | 9 | {imaging-dev} |
- nifticlib | 9 | {imaging} |
- salmon | 9 | {bio,covid-19} |
+ salmon | 9 | {covid-19,bio} |
ngs-sdk | 8 | {bio-dev} |
nifti2dicom | 8 | {imaging} |
nifticlib | 8 | {imaging-dev} |
orthanc-dicomweb | 8 | {covid-19,imaging} |
- oscar | 8 | {practice,tools,data} |
+ pixelmed | 8 | {imaging} |
lagan | 7 | {bio} |
- pixelmed | 7 | {imaging} |
+ oscar | 7 | {data,tools,practice} |
+ plastimatch | 7 | {imaging} |
mia | 6 | {imaging} |
- nifti2dicom | 6 | {imaging} |
orthanc-postgresql | 6 | {imaging} |
- plastimatch | 6 | {imaging} |
biojava-live | 5 | {bio-dev} |
getdata | 5 | {bio} |
jebl2 | 5 | {bio-dev} |
- king | 5 | {typesetting,imaging} |
+ king | 5 | {imaging,typesetting} |
libncl | 5 | {bio} |
+ openslide | 5 | {imaging-dev} |
orthanc-mysql | 5 | {imaging} |
treeview | 5 | {bio-phylogeny,bio} |
bart-view | 4 | {imaging} |
gifticlib | 4 | {imaging-dev} |
- jellyfish1 | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
melting | 4 | {cloud,bio} |
- openslide | 4 | {imaging-dev} |
orthanc-gdcm | 4 | {imaging} |
papyrus | 4 | {imaging-dev} |
pymia | 4 | {imaging-dev} |
runcircos-gui | 4 | {bio} |
srf | 4 | {bio-dev} |
stacks | 4 | {bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
brig | 3 | {bio} |
canu | 3 | {bio} |
- cat-bat | 3 | {bio,covid-19} |
+ cat-bat | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
cmtk | 3 | {imaging} |
dicompyler | 3 | {oncology} |
@@ -71,18 +70,19 @@ Last-Update: Tue, 16 Nov 2021 01:42:04 +0000
embassy-domalign | 3 | {cloud,bio} |
emboss-explorer | 3 | {bio} |
ghmm | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
lamarc | 3 | {bio} |
librg-utils-perl | 3 | {bio} |
libsbml | 3 | {bio-dev} |
obitools | 3 | {bio} |
orthanc-python | 3 | {covid-19} |
- phyutility | 3 | {cloud,bio} |
+ phyutility | 3 | {bio,cloud} |
piler | 3 | {bio} |
plasmidseeker | 3 | {bio} |
rambo-k | 3 | {bio} |
saint | 3 | {bio} |
- anfo | 2 | {cloud,bio} |
- arden | 2 | {bio,cloud} |
+ anfo | 2 | {bio,cloud} |
+ arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
bitseq | 2 | {bio} |
clonalframeml | 2 | {bio,covid-19} |
@@ -97,7 +97,7 @@ Last-Update: Tue, 16 Nov 2021 01:42:04 +0000
librdp-taxonomy-tree-java | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
metaphlan2 | 2 | {bio} |
- mhap | 2 | {bio-ngs,bio} |
+ mhap | 2 | {bio,bio-ngs} |
microbegps | 2 | {bio} |
ncbi-vdb | 2 | {bio-dev} |
opencfu | 2 | {laboratory} |
@@ -105,25 +105,24 @@ Last-Update: Tue, 16 Nov 2021 01:42:04 +0000
placnet | 2 | {bio} |
proalign | 2 | {bio,bio-phylogeny} |
rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
+ rtax | 2 | {bio,cloud} |
sibsim4 | 2 | {cloud,bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
- staden | 2 | {bio} |
tracetuner | 2 | {bio} |
varna | 2 | {bio} |
zalign | 2 | {cloud,bio} |
atropos | 1 | {bio} |
bambamc | 1 | {bio-dev} |
biomaj3-cli | 1 | {cloud} |
- bio-tradis | 1 | {bio,bio-dev} |
+ bio-tradis | 1 | {bio-dev,bio} |
blimps | 1 | {bio} |
bmtk | 1 | {psychology} |
ctn | 1 | {imaging-dev} |
dextractor | 1 | {covid-19,bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
- intake | 1 | {bio,bio-dev} |
- jmodeltest | 1 | {bio,bio-phylogeny} |
+ intake | 1 | {bio-dev,bio} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libbpp-core | 1 | {bio-dev} |
@@ -137,6 +136,7 @@ Last-Update: Tue, 16 Nov 2021 01:42:04 +0000
libgenome | 1 | {bio-dev} |
libgkarrays | 1 | {bio-dev} |
libhmsbeagle | 1 | {bio-dev} |
+ libics | 1 | {covid-19,imaging-dev} |
libmems | 1 | {bio-dev} |
libmuscle | 1 | {bio-dev} |
libncl | 1 | {bio-dev} |
@@ -146,25 +146,26 @@ Last-Update: Tue, 16 Nov 2021 01:42:04 +0000
libvistaio | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
pbseqlib | 1 | {bio-dev} |
- pigx-rnaseq | 1 | {bio,covid-19} |
+ pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
- pplacer | 1 | {bio,bio-phylogeny,covid-19} |
+ pplacer | 1 | {covid-19,bio-phylogeny,bio} |
pscan-chip | 1 | {bio} |
qcumber | 1 | {bio} |
rdp-alignment | 1 | {bio} |
sga | 1 | {bio} |
- shovill | 1 | {bio,covid-19} |
+ shovill | 1 | {covid-19,bio} |
sift | 1 | {bio} |
skesa | 1 | {bio} |
soapaligner | 1 | {bio} |
soapsnp | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
sprai | 1 | {bio} |
+ staden | 1 | {bio} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
- thesias | 1 | {covid-19,bio} |
- tophat-recondition | 1 | {bio,covid-19} |
+ thesias | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {covid-19,bio} |
tvc | 1 | {bio} |
acedb | 0 | {bio,cloud} |
biojava4-live | 0 | {bio-dev} |
@@ -178,9 +179,8 @@ Last-Update: Tue, 16 Nov 2021 01:42:04 +0000
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libctapimkt | 0 | {practice} |
- libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
libmialm | 0 | {imaging-dev} |
libpsortb | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
@@ -188,13 +188,13 @@ Last-Update: Tue, 16 Nov 2021 01:42:04 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 16 Nov 2021 01:42:04 +0000
+Last-Update: Tue, 16 Nov 2021 13:42:07 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+--------------------------------+--------------------------------+---------------------------------------------------------------------------------+-----------------------+------------------------
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3892759fb0149139039cfac0a42f0efb49b0b29b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3892759fb0149139039cfac0a42f0efb49b0b29b
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