Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ed09e7fe by Andreas Tille at 2021-11-18T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,52 +1,53 @@
-Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
+Last-Update: Thu, 18 Nov 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 192 | {imaging,covid-19} |
orthanc | 104 | {covid-19,practice,imaging} |
orthanc-wsi | 60 | {his,oncology,covid-19,laboratory,imaging,practice} |
- htsjdk | 34 | {bio-dev} |
+ htsjdk | 35 | {bio-dev} |
nipype | 32 | {imaging-dev,imaging} |
- amide | 27 | {imaging} |
+ amide | 29 | {imaging} |
+ mrtrix3 | 28 | {imaging} |
+ dicom3tools | 27 | {imaging} |
gdcm | 27 | {imaging-dev} |
- mrtrix3 | 27 | {imaging} |
- dicom3tools | 26 | {imaging} |
- dicomscope | 22 | {imaging} |
- openslide | 20 | {imaging} |
- dcm2niix | 18 | {imaging} |
+ dicomscope | 23 | {imaging} |
+ openslide | 21 | {imaging} |
+ dcm2niix | 19 | {imaging} |
ngs-sdk | 18 | {bio-dev} |
gnumed-server | 17 | {practice,covid-19} |
- invesalius | 15 | {imaging} |
- odin | 15 | {imaging,imaging-dev} |
+ odin | 17 | {imaging,imaging-dev} |
+ invesalius | 16 | {imaging} |
+ gdcm | 14 | {covid-19,imaging} |
gdcm | 14 | {imaging-dev} |
insighttoolkit4 | 14 | {imaging-dev} |
+ minc-tools | 14 | {imaging} |
orthanc-webviewer | 14 | {imaging} |
- gdcm | 13 | {covid-19,imaging} |
- minc-tools | 13 | {imaging} |
- dicomnifti | 12 | {imaging} |
+ dicomnifti | 13 | {imaging} |
+ nifticlib | 12 | {imaging} |
nifti2dicom | 11 | {imaging} |
- nifticlib | 11 | {imaging} |
adun.app | 9 | {bio} |
libminc | 9 | {imaging-dev} |
ngs-sdk | 9 | {bio-dev} |
+ pixelmed | 9 | {imaging} |
salmon | 9 | {covid-19,bio} |
ngs-sdk | 8 | {bio-dev} |
nifti2dicom | 8 | {imaging} |
nifticlib | 8 | {imaging-dev} |
- pixelmed | 8 | {imaging} |
+ king | 7 | {imaging,typesetting} |
lagan | 7 | {bio} |
+ mia | 7 | {imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
oscar | 7 | {data,tools,practice} |
- mia | 6 | {imaging} |
- plastimatch | 6 | {imaging} |
+ plastimatch | 7 | {imaging} |
biojava-live | 5 | {bio-dev} |
getdata | 5 | {bio} |
jebl2 | 5 | {bio-dev} |
- king | 5 | {imaging,typesetting} |
libncl | 5 | {bio} |
openslide | 5 | {imaging-dev} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
+ rambo-k | 5 | {bio} |
treeview | 5 | {bio-phylogeny,bio} |
bart-view | 4 | {imaging} |
gifticlib | 4 | {imaging-dev} |
@@ -56,14 +57,12 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
orthanc-gdcm | 4 | {imaging} |
papyrus | 4 | {imaging-dev} |
pymia | 4 | {imaging-dev} |
- rambo-k | 4 | {bio} |
runcircos-gui | 4 | {bio} |
srf | 4 | {bio-dev} |
stacks | 4 | {bio} |
beast-mcmc | 3 | {bio,bio-phylogeny} |
brig | 3 | {bio} |
canu | 3 | {bio} |
- cat-bat | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
cmtk | 3 | {imaging} |
elastix | 3 | {imaging} |
@@ -79,12 +78,12 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
phyutility | 3 | {bio,cloud} |
piler | 3 | {bio} |
plasmidseeker | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
saint | 3 | {bio} |
anfo | 2 | {bio,cloud} |
arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
bitseq | 2 | {bio} |
+ cat-bat | 2 | {covid-19,bio} |
clonalframeml | 2 | {bio,covid-19} |
delly | 2 | {covid-19,bio} |
embassy-domsearch | 2 | {bio,cloud} |
@@ -99,12 +98,13 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
metaphlan2 | 2 | {bio} |
mhap | 2 | {bio,bio-ngs} |
microbegps | 2 | {bio} |
- ncbi-vdb | 2 | {bio-dev} |
opencfu | 2 | {laboratory} |
phast | 2 | {bio} |
placnet | 2 | {bio} |
+ plasmidid | 2 | {covid-19,bio} |
proalign | 2 | {bio,bio-phylogeny} |
rdp-classifier | 2 | {bio} |
+ rtax | 2 | {bio,cloud} |
sibsim4 | 2 | {cloud,bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
tracetuner | 2 | {bio} |
@@ -144,11 +144,11 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
libseqlib | 1 | {bio-dev} |
libstatgen | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ ncbi-vdb | 1 | {bio-dev} |
parallel-fastq-dump | 1 | {covid-19} |
pbseqlib | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
- plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {covid-19,bio-phylogeny,bio} |
pscan-chip | 1 | {bio} |
qcumber | 1 | {bio} |
@@ -196,8 +196,8 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -210,5 +210,6 @@ Last-Update: Thu, 18 Nov 2021 01:42:04 +0000
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
-(240 rows)
+ tipp | -1 | {bio,covid-19} |
+(241 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ed09e7fe38d8134b6745023a09d79ea84f2c77ed
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ed09e7fe38d8134b6745023a09d79ea84f2c77ed
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