Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
96da7b8f by Andreas Tille at 2021-11-19T13:42:24+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,45 +1,45 @@
-Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
+Last-Update: Fri, 19 Nov 2021 13:42:05 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 192 | {imaging,covid-19} |
- orthanc | 104 | {covid-19,practice,imaging} |
- orthanc-wsi | 60 | {his,oncology,covid-19,laboratory,imaging,practice} |
- htsjdk | 35 | {bio-dev} |
+ orthanc | 103 | {covid-19,imaging,practice} |
+ orthanc-wsi | 60 | {oncology,his,laboratory,imaging,covid-19,practice} |
+ htsjdk | 33 | {bio-dev} |
nipype | 32 | {imaging-dev,imaging} |
- amide | 29 | {imaging} |
+ amide | 30 | {imaging} |
+ dicom3tools | 28 | {imaging} |
mrtrix3 | 28 | {imaging} |
- dicom3tools | 27 | {imaging} |
- gdcm | 27 | {imaging-dev} |
- dicomscope | 23 | {imaging} |
- openslide | 21 | {imaging} |
- dcm2niix | 19 | {imaging} |
- ngs-sdk | 18 | {bio-dev} |
- gnumed-server | 17 | {practice,covid-19} |
- odin | 17 | {imaging,imaging-dev} |
- invesalius | 16 | {imaging} |
- gdcm | 14 | {covid-19,imaging} |
+ gdcm | 26 | {imaging-dev} |
+ dicomscope | 24 | {imaging} |
+ openslide | 22 | {imaging} |
+ dcm2niix | 20 | {imaging} |
+ ngs-sdk | 19 | {bio-dev} |
+ odin | 18 | {imaging,imaging-dev} |
+ gnumed-server | 17 | {covid-19,practice} |
+ invesalius | 17 | {imaging} |
+ gdcm | 15 | {covid-19,imaging} |
+ dicomnifti | 14 | {imaging} |
gdcm | 14 | {imaging-dev} |
insighttoolkit4 | 14 | {imaging-dev} |
minc-tools | 14 | {imaging} |
orthanc-webviewer | 14 | {imaging} |
- dicomnifti | 13 | {imaging} |
- nifticlib | 12 | {imaging} |
+ nifticlib | 13 | {imaging} |
nifti2dicom | 11 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
adun.app | 9 | {bio} |
libminc | 9 | {imaging-dev} |
- ngs-sdk | 9 | {bio-dev} |
pixelmed | 9 | {imaging} |
- salmon | 9 | {covid-19,bio} |
+ salmon | 9 | {bio,covid-19} |
+ king | 8 | {typesetting,imaging} |
+ mia | 8 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
nifti2dicom | 8 | {imaging} |
nifticlib | 8 | {imaging-dev} |
- king | 7 | {imaging,typesetting} |
+ oscar | 8 | {data,practice,tools} |
+ plastimatch | 8 | {imaging} |
lagan | 7 | {bio} |
- mia | 7 | {imaging} |
- orthanc-dicomweb | 7 | {covid-19,imaging} |
- oscar | 7 | {data,tools,practice} |
- plastimatch | 7 | {imaging} |
+ orthanc-dicomweb | 7 | {imaging,covid-19} |
biojava-live | 5 | {bio-dev} |
getdata | 5 | {bio} |
jebl2 | 5 | {bio-dev} |
@@ -47,8 +47,8 @@ Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
openslide | 5 | {imaging-dev} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
- rambo-k | 5 | {bio} |
- treeview | 5 | {bio-phylogeny,bio} |
+ runcircos-gui | 5 | {bio} |
+ treeview | 5 | {bio,bio-phylogeny} |
bart-view | 4 | {imaging} |
gifticlib | 4 | {imaging-dev} |
libdivsufsort | 4 | {bio-dev} |
@@ -57,17 +57,17 @@ Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
orthanc-gdcm | 4 | {imaging} |
papyrus | 4 | {imaging-dev} |
pymia | 4 | {imaging-dev} |
- runcircos-gui | 4 | {bio} |
+ rambo-k | 4 | {bio} |
srf | 4 | {bio-dev} |
stacks | 4 | {bio} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
brig | 3 | {bio} |
canu | 3 | {bio} |
clonalorigin | 3 | {bio} |
cmtk | 3 | {imaging} |
elastix | 3 | {imaging} |
embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {bio,cloud} |
emboss-explorer | 3 | {bio} |
ghmm | 3 | {bio} |
jellyfish1 | 3 | {bio} |
@@ -75,18 +75,18 @@ Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
libsbml | 3 | {bio-dev} |
obitools | 3 | {bio} |
orthanc-python | 3 | {covid-19} |
- phyutility | 3 | {bio,cloud} |
+ phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
plasmidseeker | 3 | {bio} |
saint | 3 | {bio} |
- anfo | 2 | {bio,cloud} |
+ anfo | 2 | {cloud,bio} |
arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
bitseq | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
clonalframeml | 2 | {bio,covid-19} |
delly | 2 | {covid-19,bio} |
- embassy-domsearch | 2 | {bio,cloud} |
+ embassy-domsearch | 2 | {cloud,bio} |
fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
@@ -99,17 +99,16 @@ Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
mhap | 2 | {bio,bio-ngs} |
microbegps | 2 | {bio} |
opencfu | 2 | {laboratory} |
- phast | 2 | {bio} |
+ pigx-rnaseq | 2 | {bio,covid-19} |
placnet | 2 | {bio} |
- plasmidid | 2 | {covid-19,bio} |
- proalign | 2 | {bio,bio-phylogeny} |
+ proalign | 2 | {bio-phylogeny,bio} |
rdp-classifier | 2 | {bio} |
- rtax | 2 | {bio,cloud} |
- sibsim4 | 2 | {cloud,bio} |
+ rtax | 2 | {cloud,bio} |
+ sibsim4 | 2 | {bio,cloud} |
spread-phy | 2 | {bio,bio-phylogeny} |
tracetuner | 2 | {bio} |
varna | 2 | {bio} |
- zalign | 2 | {cloud,bio} |
+ zalign | 2 | {bio,cloud} |
atropos | 1 | {bio} |
bambamc | 1 | {bio-dev} |
biomaj3-cli | 1 | {cloud} |
@@ -121,8 +120,8 @@ Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
dicompyler | 1 | {oncology} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
- intake | 1 | {bio-dev,bio} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
+ intake | 1 | {bio,bio-dev} |
+ jmodeltest | 1 | {bio,bio-phylogeny} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libbpp-core | 1 | {bio-dev} |
@@ -136,7 +135,7 @@ Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
libgenome | 1 | {bio-dev} |
libgkarrays | 1 | {bio-dev} |
libhmsbeagle | 1 | {bio-dev} |
- libics | 1 | {covid-19,imaging-dev} |
+ libics | 1 | {imaging-dev,covid-19} |
libmems | 1 | {bio-dev} |
libmuscle | 1 | {bio-dev} |
libncl | 1 | {bio-dev} |
@@ -147,9 +146,9 @@ Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
ncbi-vdb | 1 | {bio-dev} |
parallel-fastq-dump | 1 | {covid-19} |
pbseqlib | 1 | {bio-dev} |
- pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
- pplacer | 1 | {covid-19,bio-phylogeny,bio} |
+ plasmidid | 1 | {bio,covid-19} |
+ pplacer | 1 | {covid-19,bio,bio-phylogeny} |
pscan-chip | 1 | {bio} |
qcumber | 1 | {bio} |
rdp-alignment | 1 | {bio} |
@@ -159,19 +158,19 @@ Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
skesa | 1 | {bio} |
soapaligner | 1 | {bio} |
soapsnp | 1 | {bio} |
- spaln | 1 | {covid-19,bio} |
+ spaln | 1 | {bio,covid-19} |
sprai | 1 | {bio} |
staden | 1 | {bio} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
- thesias | 1 | {bio,covid-19} |
- tophat-recondition | 1 | {covid-19,bio} |
+ thesias | 1 | {covid-19,bio} |
+ tophat-recondition | 1 | {bio,covid-19} |
tvc | 1 | {bio} |
- acedb | 0 | {bio,cloud} |
+ acedb | 0 | {cloud,bio} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
- cufflinks | 0 | {bio,cloud} |
+ cufflinks | 0 | {cloud,bio} |
cutesv | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
emperor | 0 | {bio} |
@@ -182,7 +181,7 @@ Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
libbioparser-dev | 0 | {bio-dev} |
libctapimkt | 0 | {practice} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmialm | 0 | {imaging-dev} |
libpsortb | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
@@ -190,26 +189,26 @@ Last-Update: Fri, 19 Nov 2021 01:42:05 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
trace2dbest | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
+ varscan | 0 | {bio,covid-19} |
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
tipp | -1 | {bio,covid-19} |
-(241 rows)
+(240 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/96da7b8f2f784647d75d04bb7f1722a5b84c796b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/96da7b8f2f784647d75d04bb7f1722a5b84c796b
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