Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
98c41d20 by Andreas Tille at 2021-11-21T03:58:51+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,214 +1,2 @@
-Last-Update: Sat, 20 Nov 2021 13:42:04 +0000
-
- Source | Vote | Tasks | Tags
--------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 192 | {imaging,covid-19} |
- orthanc | 103 | {covid-19,imaging,practice} |
- orthanc-wsi | 60 | {oncology,his,laboratory,imaging,covid-19,practice} |
- htsjdk | 32 | {bio-dev} |
- nipype | 32 | {imaging-dev,imaging} |
- amide | 31 | {imaging} |
- mrtrix3 | 28 | {imaging} |
- dicom3tools | 26 | {imaging} |
- dicomscope | 24 | {imaging} |
- gdcm | 23 | {imaging-dev} |
- openslide | 21 | {imaging} |
- dcm2niix | 20 | {imaging} |
- invesalius | 18 | {imaging} |
- ngs-sdk | 18 | {bio-dev} |
- odin | 18 | {imaging,imaging-dev} |
- gnumed-server | 16 | {covid-19,practice} |
- orthanc-webviewer | 15 | {imaging} |
- gdcm | 14 | {covid-19,imaging} |
- gdcm | 14 | {imaging-dev} |
- dicomnifti | 13 | {imaging} |
- insighttoolkit4 | 13 | {imaging-dev} |
- minc-tools | 13 | {imaging} |
- nifticlib | 12 | {imaging} |
- nifti2dicom | 11 | {imaging} |
- adun.app | 10 | {bio} |
- libminc | 9 | {imaging-dev} |
- ngs-sdk | 9 | {bio-dev} |
- pixelmed | 9 | {imaging} |
- salmon | 9 | {bio,covid-19} |
- king | 8 | {typesetting,imaging} |
- ngs-sdk | 8 | {bio-dev} |
- nifti2dicom | 8 | {imaging} |
- nifticlib | 8 | {imaging-dev} |
- oscar | 8 | {data,practice,tools} |
- lagan | 7 | {bio} |
- mia | 7 | {imaging} |
- orthanc-dicomweb | 7 | {imaging,covid-19} |
- plastimatch | 7 | {imaging} |
- biojava-live | 5 | {bio-dev} |
- getdata | 5 | {bio} |
- jebl2 | 5 | {bio-dev} |
- libncl | 5 | {bio} |
- openslide | 5 | {imaging-dev} |
- orthanc-mysql | 5 | {imaging} |
- orthanc-postgresql | 5 | {imaging} |
- runcircos-gui | 5 | {bio} |
- treeview | 5 | {bio,bio-phylogeny} |
- bart-view | 4 | {imaging} |
- gifticlib | 4 | {imaging-dev} |
- libdivsufsort | 4 | {bio-dev} |
- librg-utils-perl | 4 | {bio} |
- melting | 4 | {cloud,bio} |
- orthanc-gdcm | 4 | {imaging} |
- papyrus | 4 | {imaging-dev} |
- pymia | 4 | {imaging-dev} |
- rambo-k | 4 | {bio} |
- srf | 4 | {bio-dev} |
- stacks | 4 | {bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
- brig | 3 | {bio} |
- canu | 3 | {bio} |
- clonalorigin | 3 | {bio} |
- cmtk | 3 | {imaging} |
- elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {bio,cloud} |
- emboss-explorer | 3 | {bio} |
- ghmm | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
- lamarc | 3 | {bio} |
- libsbml | 3 | {bio-dev} |
- obitools | 3 | {bio} |
- orthanc-python | 3 | {covid-19} |
- phyutility | 3 | {cloud,bio} |
- piler | 3 | {bio} |
- plasmidseeker | 3 | {bio} |
- saint | 3 | {bio} |
- anfo | 2 | {cloud,bio} |
- arden | 2 | {cloud,bio} |
- assemblytics | 2 | {bio} |
- bitseq | 2 | {bio} |
- cat-bat | 2 | {covid-19,bio} |
- clonalframeml | 2 | {bio,covid-19} |
- delly | 2 | {covid-19,bio} |
- embassy-domsearch | 2 | {cloud,bio} |
- fastml | 2 | {bio} |
- fsm-lite | 2 | {bio} |
- gatb-core | 2 | {bio} |
- hinge | 2 | {bio} |
- ipig | 2 | {bio} |
- libpal-java | 2 | {bio-dev} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- mauve-aligner | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
- microbegps | 2 | {bio} |
- opencfu | 2 | {laboratory} |
- pigx-rnaseq | 2 | {bio,covid-19} |
- placnet | 2 | {bio} |
- proalign | 2 | {bio-phylogeny,bio} |
- rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
- sibsim4 | 2 | {bio,cloud} |
- spread-phy | 2 | {bio,bio-phylogeny} |
- tracetuner | 2 | {bio} |
- varna | 2 | {bio} |
- zalign | 2 | {bio,cloud} |
- atropos | 1 | {bio} |
- bambamc | 1 | {bio-dev} |
- biomaj3-cli | 1 | {cloud} |
- bio-tradis | 1 | {bio-dev,bio} |
- blimps | 1 | {bio} |
- bmtk | 1 | {psychology} |
- ctn | 1 | {imaging-dev} |
- dextractor | 1 | {covid-19,bio} |
- dicompyler | 1 | {oncology} |
- emmax | 1 | {bio} |
- gatb-core | 1 | {bio-dev} |
- intake | 1 | {bio,bio-dev} |
- jmodeltest | 1 | {bio,bio-phylogeny} |
- kmerresistance | 1 | {bio} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
- libbpp-core | 1 | {bio-dev} |
- libbpp-phyl | 1 | {bio-dev} |
- libbpp-phyl-omics | 1 | {bio-dev} |
- libbpp-popgen | 1 | {bio-dev} |
- libbpp-raa | 1 | {bio-dev} |
- libbpp-seq | 1 | {bio-dev} |
- libbpp-seq-omics | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
- libgenome | 1 | {bio-dev} |
- libgkarrays | 1 | {bio-dev} |
- libhmsbeagle | 1 | {bio-dev} |
- libics | 1 | {imaging-dev,covid-19} |
- libmems | 1 | {bio-dev} |
- libmuscle | 1 | {bio-dev} |
- libncl | 1 | {bio-dev} |
- libqes | 1 | {bio-dev} |
- libseqlib | 1 | {bio-dev} |
- libstatgen | 1 | {bio-dev} |
- libvistaio | 1 | {imaging-dev} |
- ncbi-vdb | 1 | {bio-dev} |
- parallel-fastq-dump | 1 | {covid-19} |
- pbseqlib | 1 | {bio-dev} |
- pique | 1 | {bio} |
- plasmidid | 1 | {bio,covid-19} |
- pplacer | 1 | {covid-19,bio,bio-phylogeny} |
- pscan-chip | 1 | {bio} |
- qcumber | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
- sga | 1 | {bio} |
- shovill | 1 | {covid-19,bio} |
- sift | 1 | {bio} |
- skesa | 1 | {bio} |
- soapaligner | 1 | {bio} |
- soapsnp | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
- sprai | 1 | {bio} |
- staden | 1 | {bio} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
- thesias | 1 | {covid-19,bio} |
- tophat-recondition | 1 | {bio,covid-19} |
- tvc | 1 | {bio} |
- acedb | 0 | {cloud,bio} |
- biojava4-live | 0 | {bio-dev} |
- biosyntax | 0 | {bio} |
- camp | 0 | {imaging-dev} |
- cufflinks | 0 | {cloud,bio} |
- cutesv | 0 | {bio} |
- eegdev | 0 | {imaging-dev} |
- emperor | 0 | {bio} |
- fis-gtm | 0 | {his} |
- htscodecs | 0 | {covid-19,bio-dev} |
- libbigwig | 0 | {bio-dev} |
- libbiod | 0 | {bio-dev} |
- libbioparser-dev | 0 | {bio-dev} |
- libctapimkt | 0 | {practice} |
- libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
- libmialm | 0 | {imaging-dev} |
- libpsortb | 0 | {bio-dev} |
- libxdf | 0 | {imaging-dev} |
- metastudent-data | 0 | {bio} |
- metastudent-data-2 | 0 | {bio} |
- mia | 0 | {imaging-dev} |
- miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
- nifticlib | 0 | {imaging-dev} |
- opensurgsim | 0 | {imaging-dev} |
- orthanc-imagej | 0 | {imaging} |
- pbcopper | 0 | {bio-dev} |
- pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
- python-seqcluster | 0 | {bio} |
- python-wdlparse | 0 | {bio-dev} |
- resfinder-db | 0 | {bio} |
- sbmltoolbox | 0 | {bio-dev} |
- seq-gen | 0 | {bio} |
- sight | 0 | {imaging-dev} |
- simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {bio,covid-19} |
- trace2dbest | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
- vienna-rna | 0 | {bio,covid-19} |
- xdffileio | 0 | {imaging-dev} |
- mssstest | -1 | {tools} |
- tipp | -1 | {bio,covid-19} |
-(240 rows)
+Last-Update: Sun, 21 Nov 2021 01:42:04 +0000
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/98c41d20de8b40f591863fd78c5cdfae6610040d
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