Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
278e715e by Andreas Tille at 2021-11-22T13:42:24+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,51 +1,50 @@
-Last-Update: Mon, 22 Nov 2021 01:42:04 +0000
+Last-Update: Mon, 22 Nov 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 191 | {imaging,covid-19} |
orthanc | 102 | {covid-19,imaging,practice} |
orthanc-wsi | 59 | {oncology,his,laboratory,imaging,covid-19,practice} |
- htsjdk | 31 | {bio-dev} |
+ htsjdk | 32 | {bio-dev} |
nipype | 31 | {imaging-dev,imaging} |
amide | 30 | {imaging} |
mrtrix3 | 27 | {imaging} |
- dicom3tools | 25 | {imaging} |
+ dicom3tools | 26 | {imaging} |
gdcm | 24 | {imaging-dev} |
dicomscope | 22 | {imaging} |
+ dcm2niix | 21 | {imaging} |
openslide | 21 | {imaging} |
- dcm2niix | 20 | {imaging} |
- invesalius | 17 | {imaging} |
ngs-sdk | 17 | {bio-dev} |
gnumed-server | 16 | {covid-19,practice} |
+ invesalius | 16 | {imaging} |
odin | 16 | {imaging,imaging-dev} |
+ gdcm | 14 | {covid-19,imaging} |
orthanc-webviewer | 14 | {imaging} |
- gdcm | 13 | {covid-19,imaging} |
gdcm | 13 | {imaging-dev} |
+ insighttoolkit4 | 13 | {imaging-dev} |
dicomnifti | 12 | {imaging} |
- insighttoolkit4 | 12 | {imaging-dev} |
minc-tools | 12 | {imaging} |
nifticlib | 10 | {imaging} |
- adun.app | 9 | {bio} |
nifti2dicom | 9 | {imaging} |
pixelmed | 9 | {imaging} |
+ adun.app | 8 | {bio} |
libminc | 8 | {imaging-dev} |
ngs-sdk | 8 | {bio-dev} |
king | 7 | {typesetting,imaging} |
nifticlib | 7 | {imaging-dev} |
oscar | 7 | {data,practice,tools} |
- salmon | 7 | {bio,covid-19} |
- lagan | 6 | {bio} |
mia | 6 | {imaging} |
nifti2dicom | 6 | {imaging} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
plastimatch | 6 | {imaging} |
+ salmon | 6 | {bio,covid-19} |
+ lagan | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
biojava-live | 4 | {bio-dev} |
getdata | 4 | {bio} |
gifticlib | 4 | {imaging-dev} |
jebl2 | 4 | {bio-dev} |
libdivsufsort | 4 | {bio-dev} |
- libncl | 4 | {bio} |
openslide | 4 | {imaging-dev} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
@@ -55,45 +54,41 @@ Last-Update: Mon, 22 Nov 2021 01:42:04 +0000
srf | 4 | {bio-dev} |
treeview | 4 | {bio,bio-phylogeny} |
bart-view | 3 | {imaging} |
+ libncl | 3 | {bio} |
libsbml | 3 | {bio-dev} |
melting | 3 | {cloud,bio} |
obitools | 3 | {bio} |
- orthanc-gdcm | 3 | {imaging} |
rambo-k | 3 | {bio} |
stacks | 3 | {bio} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
blimps | 2 | {bio} |
- brig | 2 | {bio} |
canu | 2 | {bio} |
clonalorigin | 2 | {bio} |
cmtk | 2 | {imaging} |
elastix | 2 | {imaging} |
- embassy-domainatrix | 2 | {cloud,bio} |
- embassy-domalign | 2 | {bio,cloud} |
ghmm | 2 | {bio} |
jellyfish1 | 2 | {bio} |
lamarc | 2 | {bio} |
opencfu | 2 | {laboratory} |
- orthanc-python | 2 | {covid-19} |
+ orthanc-gdcm | 2 | {imaging} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
- plasmidseeker | 2 | {bio} |
saint | 2 | {bio} |
sift | 2 | {bio} |
- anfo | 1 | {cloud,bio} |
- arden | 1 | {cloud,bio} |
assemblytics | 1 | {bio} |
bambamc | 1 | {bio-dev} |
biomaj3-cli | 1 | {cloud} |
bio-tradis | 1 | {bio-dev,bio} |
bitseq | 1 | {bio} |
bmtk | 1 | {psychology} |
+ brig | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
clonalframeml | 1 | {bio,covid-19} |
delly | 1 | {covid-19,bio} |
dicompyler | 1 | {oncology} |
+ embassy-domainatrix | 1 | {cloud,bio} |
+ embassy-domalign | 1 | {bio,cloud} |
embassy-domsearch | 1 | {cloud,bio} |
- emboss-explorer | 1 | {bio} |
fastml | 1 | {bio} |
fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
@@ -128,19 +123,23 @@ Last-Update: Mon, 22 Nov 2021 01:42:04 +0000
mhap | 1 | {bio,bio-ngs} |
microbegps | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
+ orthanc-python | 1 | {covid-19} |
pbseqlib | 1 | {bio-dev} |
pigx-rnaseq | 1 | {bio,covid-19} |
placnet | 1 | {bio} |
+ plasmidseeker | 1 | {bio} |
proalign | 1 | {bio-phylogeny,bio} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
rtax | 1 | {cloud,bio} |
sibsim4 | 1 | {bio,cloud} |
spread-phy | 1 | {bio,bio-phylogeny} |
+ staden | 1 | {bio} |
tracetuner | 1 | {bio} |
varna | 1 | {bio} |
- zalign | 1 | {bio,cloud} |
acedb | 0 | {cloud,bio} |
+ anfo | 0 | {cloud,bio} |
+ arden | 0 | {cloud,bio} |
atropos | 0 | {bio} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -150,6 +149,7 @@ Last-Update: Mon, 22 Nov 2021 01:42:04 +0000
cutesv | 0 | {bio} |
dextractor | 0 | {covid-19,bio} |
eegdev | 0 | {imaging-dev} |
+ emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
emperor | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -180,8 +180,8 @@ Last-Update: Mon, 22 Nov 2021 01:42:04 +0000
plasmidid | 0 | {bio,covid-19} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
pscan-chip | 0 | {bio} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
python-wdlparse | 0 | {bio-dev} |
qcumber | 0 | {bio} |
resfinder-db | 0 | {bio} |
@@ -197,7 +197,6 @@ Last-Update: Mon, 22 Nov 2021 01:42:04 +0000
soapsnp | 0 | {bio} |
spaln | 0 | {bio,covid-19} |
sprai | 0 | {bio} |
- staden | 0 | {bio} |
suitename | 0 | {bio} |
surankco | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
@@ -207,6 +206,7 @@ Last-Update: Mon, 22 Nov 2021 01:42:04 +0000
varscan | 0 | {bio,covid-19} |
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
+ zalign | 0 | {bio,cloud} |
mssstest | -1 | {tools} |
tipp | -1 | {bio,covid-19} |
(239 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/278e715e803f2e83ef85e901cb18d94aaefca8ed
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/278e715e803f2e83ef85e901cb18d94aaefca8ed
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