Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
5543a766 by Andreas Tille at 2021-11-24T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,19 +1,19 @@
-Last-Update: Wed, 24 Nov 2021 01:42:04 +0000
+Last-Update: Wed, 24 Nov 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 189 | {imaging,covid-19} |
- orthanc | 102 | {covid-19,imaging,practice} |
+ dcmtk | 185 | {imaging,covid-19} |
+ orthanc | 101 | {covid-19,imaging,practice} |
orthanc-wsi | 58 | {oncology,his,laboratory,imaging,covid-19,practice} |
- amide | 32 | {imaging} |
- htsjdk | 32 | {bio-dev} |
+ amide | 31 | {imaging} |
+ htsjdk | 31 | {bio-dev} |
nipype | 30 | {imaging-dev,imaging} |
mrtrix3 | 27 | {imaging} |
- dicom3tools | 26 | {imaging} |
+ dicom3tools | 25 | {imaging} |
gdcm | 25 | {imaging-dev} |
- dicomscope | 24 | {imaging} |
+ dcm2niix | 23 | {imaging} |
+ dicomscope | 23 | {imaging} |
openslide | 23 | {imaging} |
- dcm2niix | 21 | {imaging} |
gnumed-server | 16 | {covid-19,practice} |
invesalius | 16 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
@@ -21,31 +21,30 @@ Last-Update: Wed, 24 Nov 2021 01:42:04 +0000
gdcm | 14 | {covid-19,imaging} |
orthanc-webviewer | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
- insighttoolkit4 | 13 | {imaging-dev} |
- dicomnifti | 12 | {imaging} |
- minc-tools | 12 | {imaging} |
- nifticlib | 10 | {imaging} |
- pixelmed | 9 | {imaging} |
+ minc-tools | 13 | {imaging} |
+ insighttoolkit4 | 12 | {imaging-dev} |
+ dicomnifti | 11 | {imaging} |
+ nifticlib | 9 | {imaging} |
adun.app | 8 | {bio} |
+ king | 8 | {typesetting,imaging} |
libminc | 8 | {imaging-dev} |
ngs-sdk | 8 | {bio-dev} |
- king | 7 | {typesetting,imaging} |
+ pixelmed | 8 | {imaging} |
+ librg-utils-perl | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
- nifti2dicom | 7 | {imaging} |
nifticlib | 7 | {imaging-dev} |
oscar | 7 | {data,practice,tools} |
+ biojava-live | 6 | {bio-dev} |
+ mia | 6 | {imaging} |
nifti2dicom | 6 | {imaging} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
plastimatch | 6 | {imaging} |
salmon | 6 | {bio,covid-19} |
+ jebl2 | 5 | {bio-dev} |
lagan | 5 | {bio} |
- librg-utils-perl | 5 | {bio} |
- mia | 5 | {imaging} |
- biojava-live | 4 | {bio-dev} |
getdata | 4 | {bio} |
- gifticlib | 4 | {imaging-dev} |
- jebl2 | 4 | {bio-dev} |
libdivsufsort | 4 | {bio-dev} |
+ melting | 4 | {cloud,bio} |
openslide | 4 | {imaging-dev} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
@@ -55,49 +54,55 @@ Last-Update: Wed, 24 Nov 2021 01:42:04 +0000
srf | 4 | {bio-dev} |
treeview | 4 | {bio,bio-phylogeny} |
bart-view | 3 | {imaging} |
+ gifticlib | 3 | {imaging-dev} |
libncl | 3 | {bio} |
libsbml | 3 | {bio-dev} |
- melting | 3 | {cloud,bio} |
obitools | 3 | {bio} |
+ phyutility | 3 | {cloud,bio} |
rambo-k | 3 | {bio} |
+ saint | 3 | {bio} |
stacks | 3 | {bio} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
+ bio-tradis | 2 | {bio-dev,bio} |
blimps | 2 | {bio} |
canu | 2 | {bio} |
clonalorigin | 2 | {bio} |
- cmtk | 2 | {imaging} |
dicompyler | 2 | {oncology} |
elastix | 2 | {imaging} |
+ embassy-domainatrix | 2 | {cloud,bio} |
+ embassy-domalign | 2 | {bio,cloud} |
+ embassy-domsearch | 2 | {cloud,bio} |
ghmm | 2 | {bio} |
+ ipig | 2 | {bio} |
jellyfish1 | 2 | {bio} |
lamarc | 2 | {bio} |
+ libbio-mage-utils-perl | 2 | {bio-dev} |
opencfu | 2 | {laboratory} |
orthanc-gdcm | 2 | {imaging} |
- phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
- saint | 2 | {bio} |
+ proalign | 2 | {bio-phylogeny,bio} |
+ rtax | 2 | {cloud,bio} |
+ sibsim4 | 2 | {bio,cloud} |
sift | 2 | {bio} |
+ acedb | 1 | {cloud,bio} |
+ anfo | 1 | {cloud,bio} |
+ arden | 1 | {cloud,bio} |
assemblytics | 1 | {bio} |
+ atropos | 1 | {bio} |
bambamc | 1 | {bio-dev} |
biomaj3-cli | 1 | {cloud} |
- bio-tradis | 1 | {bio-dev,bio} |
bitseq | 1 | {bio} |
bmtk | 1 | {psychology} |
brig | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
clonalframeml | 1 | {bio,covid-19} |
+ cmtk | 1 | {imaging} |
delly | 1 | {covid-19,bio} |
- embassy-domainatrix | 1 | {cloud,bio} |
- embassy-domalign | 1 | {bio,cloud} |
- embassy-domsearch | 1 | {cloud,bio} |
fastml | 1 | {bio} |
fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
hinge | 1 | {bio} |
- intake | 1 | {bio,bio-dev} |
- ipig | 1 | {bio} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
libbpp-core | 1 | {bio-dev} |
libbpp-phyl | 1 | {bio-dev} |
libbpp-phyl-omics | 1 | {bio-dev} |
@@ -129,18 +134,14 @@ Last-Update: Wed, 24 Nov 2021 01:42:04 +0000
pigx-rnaseq | 1 | {bio,covid-19} |
placnet | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- proalign | 1 | {bio-phylogeny,bio} |
+ python-wdlparse | 1 | {bio-dev} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
- rtax | 1 | {cloud,bio} |
- sibsim4 | 1 | {bio,cloud} |
spread-phy | 1 | {bio,bio-phylogeny} |
+ staden | 1 | {bio} |
tracetuner | 1 | {bio} |
varna | 1 | {bio} |
- acedb | 0 | {cloud,bio} |
- anfo | 0 | {cloud,bio} |
- arden | 0 | {cloud,bio} |
- atropos | 0 | {bio} |
+ zalign | 1 | {bio,cloud} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
@@ -154,6 +155,7 @@ Last-Update: Wed, 24 Nov 2021 01:42:04 +0000
emperor | 0 | {bio} |
fis-gtm | 0 | {his} |
htscodecs | 0 | {covid-19,bio-dev} |
+ intake | 0 | {bio,bio-dev} |
jmodeltest | 0 | {bio,bio-phylogeny} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
@@ -182,7 +184,6 @@ Last-Update: Wed, 24 Nov 2021 01:42:04 +0000
pscan-chip | 0 | {bio} |
python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
- python-wdlparse | 0 | {bio-dev} |
qcumber | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -197,7 +198,6 @@ Last-Update: Wed, 24 Nov 2021 01:42:04 +0000
soapsnp | 0 | {bio} |
spaln | 0 | {bio,covid-19} |
sprai | 0 | {bio} |
- staden | 0 | {bio} |
suitename | 0 | {bio} |
surankco | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
@@ -207,8 +207,7 @@ Last-Update: Wed, 24 Nov 2021 01:42:04 +0000
varscan | 0 | {bio,covid-19} |
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
- zalign | 0 | {bio,cloud} |
mssstest | -1 | {tools} |
tipp | -1 | {bio,covid-19} |
-(240 rows)
+(239 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5543a766ed9e5ebd26988e71d492ee02a71573ce
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5543a766ed9e5ebd26988e71d492ee02a71573ce
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