Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ae64ab0b by Andreas Tille at 2021-11-25T13:42:27+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,78 +1,79 @@
-Last-Update: Thu, 25 Nov 2021 01:42:04 +0000
+Last-Update: Thu, 25 Nov 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 185 | {imaging,covid-19} |
- orthanc | 101 | {covid-19,imaging,practice} |
- orthanc-wsi | 58 | {oncology,his,laboratory,imaging,covid-19,practice} |
- amide | 31 | {imaging} |
- htsjdk | 31 | {bio-dev} |
- nipype | 30 | {imaging-dev,imaging} |
+ dcmtk | 186 | {imaging,covid-19} |
+ orthanc | 100 | {covid-19,imaging,practice} |
+ orthanc-wsi | 57 | {imaging,oncology,his,practice,laboratory,covid-19} |
+ htsjdk | 33 | {bio-dev} |
+ amide | 32 | {imaging} |
+ nipype | 30 | {imaging,imaging-dev} |
mrtrix3 | 27 | {imaging} |
- dicom3tools | 25 | {imaging} |
gdcm | 25 | {imaging-dev} |
+ dicom3tools | 24 | {imaging} |
dcm2niix | 23 | {imaging} |
dicomscope | 23 | {imaging} |
openslide | 23 | {imaging} |
- gnumed-server | 16 | {covid-19,practice} |
- invesalius | 16 | {imaging} |
+ odin | 17 | {imaging,imaging-dev} |
ngs-sdk | 16 | {bio-dev} |
- odin | 16 | {imaging,imaging-dev} |
- gdcm | 14 | {covid-19,imaging} |
+ gdcm | 15 | {covid-19,imaging} |
+ gnumed-server | 15 | {practice,covid-19} |
+ invesalius | 15 | {imaging} |
orthanc-webviewer | 14 | {imaging} |
- gdcm | 13 | {imaging-dev} |
minc-tools | 13 | {imaging} |
+ gdcm | 12 | {imaging-dev} |
insighttoolkit4 | 12 | {imaging-dev} |
dicomnifti | 11 | {imaging} |
nifticlib | 9 | {imaging} |
adun.app | 8 | {bio} |
+ biojava-live | 8 | {bio-dev} |
king | 8 | {typesetting,imaging} |
libminc | 8 | {imaging-dev} |
- ngs-sdk | 8 | {bio-dev} |
+ nifticlib | 8 | {imaging-dev} |
pixelmed | 8 | {imaging} |
librg-utils-perl | 7 | {bio} |
+ mia | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
- nifticlib | 7 | {imaging-dev} |
- oscar | 7 | {data,practice,tools} |
- biojava-live | 6 | {bio-dev} |
- mia | 6 | {imaging} |
+ ngs-sdk | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
- orthanc-dicomweb | 6 | {imaging,covid-19} |
+ orthanc-dicomweb | 6 | {covid-19,imaging} |
+ oscar | 6 | {data,tools,practice} |
plastimatch | 6 | {imaging} |
- salmon | 6 | {bio,covid-19} |
jebl2 | 5 | {bio-dev} |
lagan | 5 | {bio} |
+ openslide | 5 | {imaging-dev} |
+ salmon | 5 | {covid-19,bio} |
getdata | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
- melting | 4 | {cloud,bio} |
- openslide | 4 | {imaging-dev} |
+ libncl | 4 | {bio} |
+ melting | 4 | {bio,cloud} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
- papyrus | 4 | {imaging-dev} |
pymia | 4 | {imaging-dev} |
+ rambo-k | 4 | {bio} |
runcircos-gui | 4 | {bio} |
- srf | 4 | {bio-dev} |
- treeview | 4 | {bio,bio-phylogeny} |
+ treeview | 4 | {bio-phylogeny,bio} |
bart-view | 3 | {imaging} |
- gifticlib | 3 | {imaging-dev} |
- libncl | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
+ elastix | 3 | {imaging} |
+ embassy-domalign | 3 | {bio,cloud} |
libsbml | 3 | {bio-dev} |
obitools | 3 | {bio} |
+ papyrus | 3 | {imaging-dev} |
phyutility | 3 | {cloud,bio} |
- rambo-k | 3 | {bio} |
saint | 3 | {bio} |
+ srf | 3 | {bio-dev} |
stacks | 3 | {bio} |
+ arden | 2 | {cloud,bio} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
bio-tradis | 2 | {bio-dev,bio} |
blimps | 2 | {bio} |
canu | 2 | {bio} |
- clonalorigin | 2 | {bio} |
dicompyler | 2 | {oncology} |
- elastix | 2 | {imaging} |
- embassy-domainatrix | 2 | {cloud,bio} |
- embassy-domalign | 2 | {bio,cloud} |
- embassy-domsearch | 2 | {cloud,bio} |
+ embassy-domainatrix | 2 | {bio,cloud} |
+ embassy-domsearch | 2 | {bio,cloud} |
ghmm | 2 | {bio} |
+ gifticlib | 2 | {imaging-dev} |
ipig | 2 | {bio} |
jellyfish1 | 2 | {bio} |
lamarc | 2 | {bio} |
@@ -80,13 +81,14 @@ Last-Update: Thu, 25 Nov 2021 01:42:04 +0000
opencfu | 2 | {laboratory} |
orthanc-gdcm | 2 | {imaging} |
piler | 2 | {bio} |
- proalign | 2 | {bio-phylogeny,bio} |
- rtax | 2 | {cloud,bio} |
+ proalign | 2 | {bio,bio-phylogeny} |
+ rtax | 2 | {bio,cloud} |
sibsim4 | 2 | {bio,cloud} |
sift | 2 | {bio} |
+ staden | 2 | {bio} |
+ tracetuner | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- anfo | 1 | {cloud,bio} |
- arden | 1 | {cloud,bio} |
+ anfo | 1 | {bio,cloud} |
assemblytics | 1 | {bio} |
atropos | 1 | {bio} |
bambamc | 1 | {bio-dev} |
@@ -114,7 +116,7 @@ Last-Update: Thu, 25 Nov 2021 01:42:04 +0000
libgenome | 1 | {bio-dev} |
libgkarrays | 1 | {bio-dev} |
libhmsbeagle | 1 | {bio-dev} |
- libics | 1 | {imaging-dev,covid-19} |
+ libics | 1 | {covid-19,imaging-dev} |
libmems | 1 | {bio-dev} |
libmuscle | 1 | {bio-dev} |
libncl | 1 | {bio-dev} |
@@ -126,44 +128,43 @@ Last-Update: Thu, 25 Nov 2021 01:42:04 +0000
libvistaio | 1 | {imaging-dev} |
mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
- mhap | 1 | {bio,bio-ngs} |
+ mhap | 1 | {bio-ngs,bio} |
microbegps | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
orthanc-python | 1 | {covid-19} |
pbseqlib | 1 | {bio-dev} |
- pigx-rnaseq | 1 | {bio,covid-19} |
+ pigx-rnaseq | 1 | {covid-19,bio} |
placnet | 1 | {bio} |
plasmidseeker | 1 | {bio} |
python-wdlparse | 1 | {bio-dev} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
- spread-phy | 1 | {bio,bio-phylogeny} |
- staden | 1 | {bio} |
- tracetuner | 1 | {bio} |
+ spread-phy | 1 | {bio-phylogeny,bio} |
+ thesias | 1 | {covid-19,bio} |
varna | 1 | {bio} |
+ vienna-rna | 1 | {covid-19,bio} |
zalign | 1 | {bio,cloud} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
- cufflinks | 0 | {cloud,bio} |
+ cufflinks | 0 | {bio,cloud} |
cutesv | 0 | {bio} |
- dextractor | 0 | {covid-19,bio} |
+ dextractor | 0 | {bio,covid-19} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
emperor | 0 | {bio} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
intake | 0 | {bio,bio-dev} |
jmodeltest | 0 | {bio,bio-phylogeny} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
- libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libctapimkt | 0 | {practice} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
libmialm | 0 | {imaging-dev} |
libpsortb | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
@@ -179,17 +180,17 @@ Last-Update: Thu, 25 Nov 2021 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pique | 0 | {bio} |
- plasmidid | 0 | {bio,covid-19} |
+ plasmidid | 0 | {covid-19,bio} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
pscan-chip | 0 | {bio} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
qcumber | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
sga | 0 | {bio} |
- shovill | 0 | {covid-19,bio} |
+ shovill | 0 | {bio,covid-19} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
skesa | 0 | {bio} |
@@ -200,14 +201,12 @@ Last-Update: Thu, 25 Nov 2021 01:42:04 +0000
sprai | 0 | {bio} |
suitename | 0 | {bio} |
surankco | 0 | {bio} |
- thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
trace2dbest | 0 | {bio} |
tvc | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
- vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
- tipp | -1 | {bio,covid-19} |
-(239 rows)
+ tipp | -1 | {covid-19,bio} |
+(238 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ae64ab0bb606669f622c87f8a0c92b7442ff6514
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ae64ab0bb606669f622c87f8a0c92b7442ff6514
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