[med-svn] [Git][med-team/seqmagick][master] 2 commits: d/control, pytest.patch: replace nose by pytest

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / seqmagick


Commits:
55d2fca9 by Étienne Mollier at 2021-11-28T12:07:14+01:00
d/control,pytest.patch: replace nose by pytest

- - - - -
f3f514e0 by Étienne Mollier at 2021-11-28T12:08:14+01:00
update changelog

Please wait for python-biopython binnmu rebuild to complete,
otherwise it is not compatible with python3.10.

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/pytest.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+seqmagick (0.8.4-3) UNRELEASED; urgency=medium
+
+NOTE: wait for python-biopython to be compatible with python3.10.
+  * d/control,pytest.patch: replace nose by pytest.
+
+ -- Étienne Mollier <emollier at debian.org>  Sun, 28 Nov 2021 11:14:57 +0100
+
 seqmagick (0.8.4-2) unstable; urgency=medium
 
   * d/watch: adjust link, following changes in Github


=====================================
debian/control
=====================================
@@ -8,7 +8,7 @@ Build-Depends: debhelper-compat (= 13),
                dh-python,
                python3-all,
                python3-setuptools,
-               python3-nose,
+               python3-pytest <!nocheck>,
                python3-biopython,
                python3-pygtrie
 Standards-Version: 4.6.0


=====================================
debian/patches/pytest.patch
=====================================
@@ -0,0 +1,79 @@
+Description: replace nosetests by pytest
+ nosetests 1 is not maintained anymore and going to be removed from Debian.
+ See https://lists.debian.org/debian-python/2021/10/msg00060.html
+Author: Étienne Mollier <emollier at debian.org>
+Forwarded: not-needed
+Last-Update: 2021-11-28
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- seqmagick.orig/.travis.yml
++++ seqmagick/.travis.yml
+@@ -12,12 +12,12 @@
+ # BioPython doesn't always play well with pip install.
+ install:
+   - "if [[ $TRAVIS_PYTHON_VERSION != 'pypy' ]]; then pip install -q numpy; fi"
+-  - "pip install -q biopython nose pygtrie"
++  - "pip install -q biopython pytest pygtrie"
+   - "pip install ."
+ 
+ script:
+   - seqmagick --version
+-  - nosetests
++  - pytest-3
+ 
+ notifications:
+   email:
+--- seqmagick.orig/DEVELOPING.rst
++++ seqmagick/DEVELOPING.rst
+@@ -50,7 +50,7 @@
+ 
+ Run tests, and make sure docs build without errors::
+ 
+-  nosetests
++  pytest-3
+   (cd docs && make html)
+ 
+ Push one last time to master to trigger tests on travis::
+--- seqmagick.orig/requirements.txt
++++ seqmagick/requirements.txt
+@@ -4,6 +4,6 @@
+ # for development
+ wheel
+ sphinx
+-nose
++pytest
+ twine
+ ghp-import
+--- seqmagick.orig/setup.py
++++ seqmagick/setup.py
+@@ -32,9 +32,9 @@
+           'seqmagick': ['data/*'],
+           'seqmagick.test.integration': ['data/*']
+       },
+-      setup_requires=['nose>=1.0'],
++      setup_requires=['pytest>=6.0'],
+       python_requires='>=3.5',
+-      test_suite='nose.collector',
++      test_suite='pytest.collect',
+       install_requires=['biopython>=1.78', 'pygtrie>=2.1'],
+       classifiers=[
+           'License :: OSI Approved :: GNU General Public License (GPL)',
+--- seqmagick.orig/tox.ini
++++ seqmagick/tox.ini
+@@ -3,13 +3,11 @@
+ [testenv]
+ deps =
+     numpy
+-    nose
+-    rednose
++    pytest
+     biopython
+-commands = nosetests --rednose []
++commands = pytest-3 []
+ 
+ [testenv:pypy]
+ deps =
+-    nose
+-    rednose
++    pytest
+     biopython


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 biopython_1.71_dual_coding_support.patch
+pytest.patch



View it on GitLab: https://salsa.debian.org/med-team/seqmagick/-/compare/5ebfc204f556fb08b4642213d652c9467ab9ff5f...f3f514e0b0a7486ec30f177a3831778273b2414a

-- 
View it on GitLab: https://salsa.debian.org/med-team/seqmagick/-/compare/5ebfc204f556fb08b4642213d652c9467ab9ff5f...f3f514e0b0a7486ec30f177a3831778273b2414a
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