[med-svn] [Git][med-team/pilon][master] Add TODO

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / pilon


Commits:
2eada9a2 by Andreas Tille at 2021-10-01T16:48:57+02:00
Add TODO

- - - - -


1 changed file:

- debian/changelog


Changes:

=====================================
debian/changelog
=====================================
@@ -7,6 +7,16 @@ pilon (1.24-1) UNRELEASED; urgency=medium
   [ Steffen Moeller ]
   * Fix watchfile to detect new versions on github (routine-update)
 
+  TODO:
+...
+src/main/scala/org/broadinstitute/pilon/PileUpRegion.scala:136: error: value asScala is not a member of java.util.List[htsjdk.samtools.CigarElement]
+    val cigarElements = cigar.getCigarElements.asScala
+                                               ^
+src/main/scala/org/broadinstitute/pilon/Scaffold.scala:351: error: value asScala is not a member of htsjdk.samtools.SAMRecordIterator
+    for (read <- reader.iterator.asScala if (!read.getReadUnmappedFlag)) {
+                                 ^
+10 errors found
+
  -- Andreas Tille <tille at debian.org>  Thu, 09 Sep 2021 08:21:06 +0200
 
 pilon (1.23+dfsg-2) unstable; urgency=medium



View it on GitLab: https://salsa.debian.org/med-team/pilon/-/commit/2eada9a2760773c70d5cfa0b2623fc30578fdb95

-- 
View it on GitLab: https://salsa.debian.org/med-team/pilon/-/commit/2eada9a2760773c70d5cfa0b2623fc30578fdb95
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