[med-svn] [Git][med-team/vg][master] 15 commits: Added patch to deal with bashim.

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / vg


Commits:
48504edc by Michael R. Crusoe at 2021-01-28T13:21:53+01:00
Added patch to deal with bashim.

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b457140f by Michael R. Crusoe at 2021-01-28T18:07:18+01:00
debian/rules: unset LD_PRELOAD for qemu build + testing

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faccffcf by Michael R. Crusoe at 2021-03-05T10:43:57+01:00
debian/rules: if the SIMD level is supported by the build CPU as reported by lscpu, then require the tests for that version of the vg binary to pass.

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e06161dc by Michael R. Crusoe at 2021-03-05T10:50:43+01:00
routine-update: New upstream version

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6ff1c441 by Michael R. Crusoe at 2021-03-05T10:50:48+01:00
New upstream version 1.31.0+ds
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c06616e9 by Michael R. Crusoe at 2021-03-05T10:53:13+01:00
Update upstream source from tag 'upstream/1.31.0+ds'

Update to upstream version '1.31.0+ds'
with Debian dir 4b042926da9607137a1f947a5de52c0c62d1c938
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ffa6cf79 by Michael R. Crusoe at 2021-03-05T11:06:08+01:00
debian/copyright: freshen

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50719e67 by Michael R. Crusoe at 2021-03-05T11:07:21+01:00
Freshen patches

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002eb1f3 by Michael R. Crusoe at 2021-03-05T11:24:13+01:00
TODO: fix libssw divergence

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6efcea9c by Michael R. Crusoe at 2021-10-08T15:34:31+02:00
routine-update: New upstream version

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ebde6cb6 by Michael R. Crusoe at 2021-10-08T15:34:36+02:00
New upstream version 1.35.0+ds
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e1ae857f by Michael R. Crusoe at 2021-10-08T15:37:04+02:00
Update upstream source from tag 'upstream/1.35.0+ds'

Update to upstream version '1.35.0+ds'
with Debian dir 98723efc23a76c9a1601ef1e93ca9d3553a4881a
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285fe10b by Michael R. Crusoe at 2021-10-08T15:37:05+02:00
routine-update: Standards-Version: 4.6.0

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845f264d by Michael R. Crusoe at 2021-10-08T18:51:30+02:00
Refresh patches.

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f35bf129 by Michael R. Crusoe at 2021-10-08T18:51:31+02:00
update clean list

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30 changed files:

- + .github/workflows/testmac.yml
- .gitlab-ci.yml
- .gitmodules
- − .travis.yml
- Brewfile
- Dockerfile
- Makefile
- README.md
- debian/changelog
- debian/clean
- debian/control
- debian/copyright
- debian/patches/better_clean
- debian/patches/crossbuild
- debian/patches/fix-handlegraph
- − debian/patches/gcc-10
- debian/patches/hardening_flags
- debian/patches/libVCFH_unneeded
- debian/patches/no_need_for_snappy
- debian/patches/no_rpath
- debian/patches/python3
- debian/patches/series
- debian/patches/simde
- − debian/patches/spelling
- debian/patches/static
- debian/patches/use_packaged_elfutils
- debian/patches/use_packaged_fastahack
- debian/patches/use_packaged_fermi-lite
- debian/patches/use_packaged_htslib
- debian/patches/use_packaged_jemalloc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/vg/-/compare/7d3ee737e287d9aa04b09618ac77dafa1f016d28...f35bf129c24aeab2c206b70231a852bce294dd64

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View it on GitLab: https://salsa.debian.org/med-team/vg/-/compare/7d3ee737e287d9aa04b09618ac77dafa1f016d28...f35bf129c24aeab2c206b70231a852bce294dd64
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