[med-svn] [Git][med-team/terraphast][master] 2 commits: Add publication

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / terraphast


Commits:
b730cc40 by Andreas Tille at 2021-10-22T10:01:15+02:00
Add publication

- - - - -
1f3d8283 by Andreas Tille at 2021-10-22T10:22:06+02:00
Override dh_install

- - - - -


5 changed files:

- debian/control
- + debian/libterraphast-dev.install
- debian/rules
- + debian/terraphast.install
- + debian/upstream/metadata


Changes:

=====================================
debian/control
=====================================
@@ -5,7 +5,7 @@ Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
                cmake,
-               d-shlibs,
+               dh-exec,
                libgmp3-dev
 Standards-Version: 4.6.0
 Vcs-Browser: https://salsa.debian.org/med-team/terraphast
@@ -25,3 +25,19 @@ Description: enumerate terraces in phylogenetic tree space
  Program output states some imput data properties, the species whose leaf
  edge is used as a new tree root, and the resulting supertree in
  compressed newick format.
+
+Package: libterraphast-dev
+Architecture: any
+Section: libdevel
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: enumerate terraces in phylogenetic tree space (development lib)
+ Terraphast takes a .nkw file in Newick format and a genes/sites file,
+ which denotes whether (1) or not (0) gene i is present in species j.
+ .
+ Program output states some imput data properties, the species whose leaf
+ edge is used as a new tree root, and the resulting supertree in
+ compressed newick format.
+ .
+ This package contains a library to use the terraphast algorithm in own
+ projects.


=====================================
debian/libterraphast-dev.install
=====================================
@@ -0,0 +1,3 @@
+#! /usr/bin/dh-exec
+obj-*/*.a	usr/lib/${DEB_HOST_MULTIARCH}/
+include		usr


=====================================
debian/rules
=====================================
@@ -2,9 +2,15 @@
 
 # DH_VERBOSE := 1
 
+include /usr/share/dpkg/default.mk
+
 # for hardening you might like to uncomment this:
 # export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
 %:
 	dh $@
 
+override_dh_install:
+	mkdir -p debian/$(DEB_SOURCE)/usr/bin
+	mv obj-$$(dpkg-architecture -qDEB_TARGET_GNU_TYPE)/app debian/$(DEB_SOURCE)/usr/bin/$(DEB_SOURCE)
+	dh_install


=====================================
debian/terraphast.install
=====================================
@@ -0,0 +1,7 @@
+obj-*/isomorphic	usr/lib/terraphast/
+obj-*/nwk_to_dot	usr/lib/terraphast/
+obj-*/reroot		usr/lib/terraphast/
+obj-*/site_gen		usr/lib/terraphast/
+obj-*/tree_gen		usr/lib/terraphast/
+obj-*/validated_run	usr/lib/terraphast/
+obj-*/verbose_run	usr/lib/terraphast/


=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1,11 @@
+Reference:
+ - Author: Michael J. Sanderson and Michelle M. McMahon and Mike Steel
+   Title: Terraces in phylogenetic tree space
+   Journal: Science
+   Year: 2011
+   Volume: 333
+   Number: 6041
+   Pages: 448-450
+   DOI: 10.1126/science.1206357
+   PMID: 21680810
+   URL: https://www.science.org/doi/10.1126/science.1206357



View it on GitLab: https://salsa.debian.org/med-team/terraphast/-/compare/e6eb13ab8a5bcf1ae688c73b08f8a15448d3c658...1f3d828389abd7fea64526afb32a3e40ef5f9dda

-- 
View it on GitLab: https://salsa.debian.org/med-team/terraphast/-/compare/e6eb13ab8a5bcf1ae688c73b08f8a15448d3c658...1f3d828389abd7fea64526afb32a3e40ef5f9dda
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