[med-svn] [Git][med-team/python-biopython][master] 7 commits: d/changelog: prepare for unstable

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / python-biopython


Commits:
6371465c by Étienne Mollier at 2021-10-22T16:36:55+02:00
d/changelog: prepare for unstable

- - - - -
934d22fc by Étienne Mollier at 2021-10-22T16:53:20+02:00
Mark spelling.patch as not needing forward

It seems that the file being package might not exists in upcoming
Biopython versions anymore.

- - - - -
ffbef548 by Étienne Mollier at 2021-10-22T18:04:56+02:00
adjust-test_GraphicsBitmaps.patch: forwarded upstream

- - - - -
1b3afa09 by Étienne Mollier at 2021-10-22T18:06:59+02:00
update changelog

- - - - -
93a94954 by Étienne Mollier at 2021-10-22T18:09:08+02:00
d/control: breaks ncbi-acc-download (<< 0.2.7-2~)

- - - - -
cc95b59c by Étienne Mollier at 2021-10-22T18:10:12+02:00
update changelog

- - - - -
676bb97a by Étienne Mollier at 2021-10-22T18:39:37+02:00
routine-update: Ready to upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/patches/adjust-test_GraphicsBitmaps.patch
- debian/patches/spelling.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+python-biopython (1.79+dfsg-1) unstable; urgency=medium
+
+  * Migrate from Experimental to Unstable.
+  * Mark spelling.patch as not needing forward.
+    It seems that the file being package might not exists in upcoming
+    Biopython versions anymore.
+  * adjust-test_GraphicsBitmaps.patch: forwarded upstream.
+  * d/control: breaks ncbi-acc-download (<< 0.2.7-2~)
+
+ -- Étienne Mollier <emollier at debian.org>  Fri, 22 Oct 2021 18:10:48 +0200
+
 python-biopython (1.79+dfsg-1~0exp0) experimental; urgency=medium
 
   * New upstream version


=====================================
debian/control
=====================================
@@ -89,7 +89,8 @@ Suggests: python3-tk,
           t-coffee,
           wise,
           w3-dtd-mathml
-Breaks: cnvkit (<< 0.9.7-1~)
+Breaks: cnvkit (<< 0.9.7-1~),
+        ncbi-acc-download (<< 0.2.7-2~)
 Description: Python3 library for bioinformatics
  The Biopython Project is an international association
  of developers of freely available Python tools for


=====================================
debian/patches/adjust-test_GraphicsBitmaps.patch
=====================================
@@ -1,17 +1,18 @@
 Description: adjust test skipping logic for new error message in renderpm
 Author: Étienne Mollier <emollier at debian.org>
-Forwarded: no
+Forwarded: https://github.com/biopython/biopython/pull/3767
 Last-Update: 2021-10-16
 ---
 This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
 --- python-biopython.orig/Tests/test_GraphicsBitmaps.py
 +++ python-biopython/Tests/test_GraphicsBitmaps.py
-@@ -102,7 +102,7 @@
+@@ -102,7 +102,8 @@
          else:
              raise
      except RenderPMError as err:
 -        if str(err).startswith("Can't setFont("):
-+        if str(err).startswith("Can't setFont(") or str(err).startswith("Error in setFont("):
++        if (str(err).startswith("Can't setFont(")
++                or str(err).startswith("Error in setFont(")):
              # TODO - can we raise the error BEFORE the unit test function
              # is run? That way it can be skipped in run_tests.py
              raise MissingExternalDependencyError(


=====================================
debian/patches/spelling.patch
=====================================
@@ -1,6 +1,6 @@
 Description: fix spelling-error-in-binary
 Author: Étienne Mollier <emollier at debian.org>
-Forwarded: no
+Forwarded: not-needed
 Last-Update: 2021-10-16
 ---
 This patch header follows DEP-3: http://dep.debian.net/deps/dep3/



View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/955331683926a4b741af8ff819e972de46ab042c...676bb97a40d3752fa951980145c153fb989253db

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/955331683926a4b741af8ff819e972de46ab042c...676bb97a40d3752fa951980145c153fb989253db
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