[med-svn] [Git][med-team/fastqtl][master] 7 commits: d/rules: Force -std=c++14

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / fastqtl


Commits:
eaad7168 by Nilesh Patra at 2021-10-23T18:03:42+05:30
d/rules: Force -std=c++14

- - - - -
a863b8ee by Nilesh Patra at 2021-10-23T18:09:57+05:30
Bump debhelper compatibility level to 13

- - - - -
0be58692 by Nilesh Patra at 2021-10-23T18:10:00+05:30
Bump Standards-Version to 4.6.0 (no changes needed)

- - - - -
e22618e1 by Nilesh Patra at 2021-10-23T18:11:42+05:30
Replace deprecated ADTTMP with AUTOPKGTEST_TMP

- - - - -
b73ad2c4 by Nilesh Patra at 2021-10-23T18:13:18+05:30
Add "Rules-Requires-Root: no"

- - - - -
80b9963c by Nilesh Patra at 2021-10-23T18:22:20+05:30
Update override

- - - - -
b31bcccd by Nilesh Patra at 2021-10-23T18:22:20+05:30
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- debian/fastqtl.lintian-overrides
- debian/rules
- debian/tests/run-sample-analysis


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,22 @@
+fastqtl (2.184+dfsg-8) unstable; urgency=medium
+
+  * Team Upload.
+  [ Steffen Moeller ]
+  * d/u/metadata: yamllint
+
+  [ Dylan Aïssi ]
+  * Update my email
+
+  [ Nilesh Patra ]
+  * d/rules: Force -std=c++14
+  * Bump debhelper compatibility level to 13
+  * Bump Standards-Version to 4.6.0 (no changes needed)
+  * Replace deprecated ADTTMP with AUTOPKGTEST_TMP
+  * Add "Rules-Requires-Root: no"
+  * Update override
+
+ -- Nilesh Patra <nilesh at debian.org>  Sat, 23 Oct 2021 18:14:58 +0530
+
 fastqtl (2.184+dfsg-7) unstable; urgency=medium
 
   * Team upload


=====================================
debian/control
=====================================
@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Dylan Aïssi <daissi at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                libboost-dev,
                libboost-iostreams-dev,
                libboost-program-options-dev,
@@ -13,10 +13,11 @@ Build-Depends: debhelper-compat (= 12),
                libblas-dev,
                libeigen3-dev,
                libhts-dev
-Standards-Version: 4.4.0
+Standards-Version: 4.6.0
 Vcs-Browser: https://salsa.debian.org/med-team/fastqtl
 Vcs-Git: https://salsa.debian.org/med-team/fastqtl.git
 Homepage: http://fastqtl.sourceforge.net/
+Rules-Requires-Root: no
 
 Package: fastqtl
 Architecture: any


=====================================
debian/fastqtl.lintian-overrides
=====================================
@@ -1,3 +1,3 @@
 # False positive: "Buil" is the name of a developer of FastQTL.
 fastqtl: spelling-error-in-copyright Buil Build
-fastqtl: spelling-error-in-manpage usr/share/man/man1/fastQTL.1.gz Buil Build
+typo-in-manual-page usr/share/man/man1/fastQTL.1.gz line 140 Buil Build


=====================================
debian/rules
=====================================
@@ -4,6 +4,7 @@
 CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS 2>/dev/null | sed -e 's/-O2//g')
 
 export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+export DEB_CXXFLAGS_MAINT_APPEND = -std=c++14
 
 %:
 	dh $@


=====================================
debian/tests/run-sample-analysis
=====================================
@@ -5,13 +5,13 @@
 # Last-Update: 2016-04-02
 
 pkg=fastqtl
-if [ "$ADTTMP" = "" ] ; then
-  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
 fi
-cd $ADTTMP
-cp -a /usr/share/doc/${pkg}/examples/* $ADTTMP
+cd $AUTOPKGTEST_TMP
+cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
 
-tar Jxvf $ADTTMP/examples.tar.xz
+tar Jxvf $AUTOPKGTEST_TMP/examples.tar.xz
 
 fastQTL \
      --vcf genotypes.vcf.gz \
@@ -26,5 +26,5 @@ fastQTL \
 
 diff fastqtl_expected_output.txt fastqtl_output.txt
 
-rm -f $ADTTMP/*
+rm -f $AUTOPKGTEST_TMP/*
 



View it on GitLab: https://salsa.debian.org/med-team/fastqtl/-/compare/27ace0434ae3c641bfc0debdb110d799d5275272...b31bcccdffe5c7dbf9fccabfb4583b0b83ac91b8

-- 
View it on GitLab: https://salsa.debian.org/med-team/fastqtl/-/compare/27ace0434ae3c641bfc0debdb110d799d5275272...b31bcccdffe5c7dbf9fccabfb4583b0b83ac91b8
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