[med-svn] [Git][med-team/racon][upstream] New upstream version 1.4.21

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / racon


Commits:
683c68cf by Andreas Tille at 2021-09-01T17:17:12+02:00
New upstream version 1.4.21
- - - - -


3 changed files:

- CMakeLists.txt
- src/polisher.cpp
- test/racon_test.cpp


Changes:

=====================================
CMakeLists.txt
=====================================
@@ -1,6 +1,6 @@
 cmake_minimum_required(VERSION 3.2)
 project(racon)
-set(racon_version 1.4.20)
+set(racon_version 1.4.21)
 
 set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
 set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)


=====================================
src/polisher.cpp
=====================================
@@ -299,7 +299,7 @@ void Polisher::initialize() {
                     if (overlaps[j] == nullptr) {
                         continue;
                     }
-                    if (overlaps[i]->length() > overlaps[j]->length()) {
+                    if (overlaps[i]->length() >= overlaps[j]->length()) {
                         overlaps[j].reset();
                     } else {
                         overlaps[i].reset();


=====================================
test/racon_test.cpp
=====================================
@@ -233,13 +233,13 @@ TEST_F(RaconPolishingTest, FragmentCorrectionWithQualities) {
 
     std::vector<std::unique_ptr<racon::Sequence>> polished_sequences;
     polish(polished_sequences, true);
-    EXPECT_EQ(polished_sequences.size(), 39);
+    EXPECT_EQ(polished_sequences.size(), 40);
 
     uint32_t total_length = 0;
     for (const auto& it : polished_sequences) {
         total_length += it->data().size();
     }
-    EXPECT_EQ(total_length, 389394);
+    EXPECT_EQ(total_length, 401246);
 }
 
 TEST_F(RaconPolishingTest, FragmentCorrectionWithQualitiesFull) {
@@ -444,13 +444,13 @@ TEST_F(RaconPolishingTest, FragmentCorrectionWithQualitiesCUDA) {
 
     std::vector<std::unique_ptr<racon::Sequence>> polished_sequences;
     polish(polished_sequences, true);
-    EXPECT_EQ(polished_sequences.size(), 39);
+    EXPECT_EQ(polished_sequences.size(), 40);
 
     uint32_t total_length = 0;
     for (const auto& it : polished_sequences) {
         total_length += it->data().size();
     }
-    EXPECT_EQ(total_length, 385543);  // CPU 389394
+    EXPECT_EQ(total_length, 397185);  // CPU 389394
 }
 
 TEST_F(RaconPolishingTest, FragmentCorrectionWithQualitiesFullCUDA) {



View it on GitLab: https://salsa.debian.org/med-team/racon/-/commit/683c68cfacfeb310b06c6b172bbf49266d7c104e

-- 
View it on GitLab: https://salsa.debian.org/med-team/racon/-/commit/683c68cfacfeb310b06c6b172bbf49266d7c104e
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