[med-svn] [Git][med-team/covpipe][master] 6 commits: New upstream version 3.0.6

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / covpipe


Commits:
f50c03dc by Andreas Tille at 2021-09-15T09:38:43+02:00
New upstream version 3.0.6
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f3bcba61 by Andreas Tille at 2021-09-15T09:38:43+02:00
routine-update: New upstream version

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4f1f40a7 by Andreas Tille at 2021-09-15T09:38:44+02:00
Update upstream source from tag 'upstream/3.0.6'

Update to upstream version '3.0.6'
with Debian dir 95f7f1e96193337a116877d061c907830953c9f8
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f7bfa16f by Andreas Tille at 2021-09-15T09:38:45+02:00
routine-update: Standards-Version: 4.6.0

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fd858b33 by Andreas Tille at 2021-09-15T09:38:51+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-file-is-missing
See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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0ac2b6e6 by Andreas Tille at 2021-09-15T09:40:03+02:00
Remove unused test, cleanup changelog

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30 changed files:

- + .conda/3.0.3/build.sh
- + .conda/3.0.3/meta.yaml
- + .conda/3.0.4/build.sh
- + .conda/3.0.4/meta.yaml
- + .conda/3.0.5/build.sh
- + .conda/3.0.5/meta.yaml
- .conda/meta.yaml
- .gitlab-ci.yml
- Dockerfile
- README.md
- covpipe/__version__.py
- covpipe/ncov_minipipe.Rmd
- covpipe/ncov_minipipe.config
- covpipe/ncov_minipipe.py
- covpipe/ncov_minipipe.snake
- covpipe/rules/assign_lineage.smk
- covpipe/rules/classify_reads.smk
- covpipe/rules/get_version.smk
- covpipe/rules/trim_reads.smk
- covpipe_env.yaml
- + covpipe_tools/primerbed2bedpe.py
- covpipe_tools/update_pangolin.py
- debian/changelog
- debian/control
- − debian/tests/control_deactivated
- − debian/tests/run-unit-test
- + debian/upstream/metadata
- ncov_minipipe.conda.setup/setup_env.sh
- setup.py
- tests/TestData/GEN_SAMPLES/mixture.csv


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/covpipe/-/compare/27045924819a3c4827c5c75350d95578621ac167...0ac2b6e6bc7129f2451763e584b80b9ea723dd0d

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View it on GitLab: https://salsa.debian.org/med-team/covpipe/-/compare/27045924819a3c4827c5c75350d95578621ac167...0ac2b6e6bc7129f2451763e584b80b9ea723dd0d
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