Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
427b49fd by Andreas Tille at 2021-09-21T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,160 +1,152 @@
-Last-Update: Tue, 21 Sep 2021 01:42:04 +0000
+Last-Update: Tue, 21 Sep 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 178 | {covid-19,imaging} |
- orthanc | 104 | {imaging,covid-19,practice} |
- orthanc-wsi | 51 | {imaging,practice,his,covid-19,oncology,laboratory} |
- gdcm | 33 | {imaging-dev} |
- amide | 28 | {imaging} |
- dicom3tools | 28 | {imaging} |
- dcm2niix | 25 | {imaging} |
- dicomscope | 25 | {imaging} |
- htsjdk | 25 | {bio-dev} |
- odin | 21 | {imaging-dev,imaging} |
- gdcm | 20 | {covid-19,imaging} |
- minc-tools | 17 | {imaging} |
- nifticlib | 16 | {imaging} |
- orthanc-webviewer | 16 | {imaging} |
- insighttoolkit4 | 15 | {imaging-dev} |
- dicomnifti | 13 | {imaging} |
+ orthanc | 100 | {imaging,covid-19,practice} |
+ orthanc-wsi | 58 | {imaging,practice,his,covid-19,oncology,laboratory} |
+ nipype | 33 | {imaging-dev,imaging} |
+ gdcm | 29 | {imaging-dev} |
+ htsjdk | 29 | {bio-dev} |
+ amide | 25 | {imaging} |
+ dicom3tools | 25 | {imaging} |
+ dcm2niix | 23 | {imaging} |
+ dicomscope | 19 | {imaging} |
+ orthanc-webviewer | 17 | {imaging} |
+ openslide | 16 | {imaging} |
+ gdcm | 15 | {imaging-dev} |
+ gdcm | 15 | {covid-19,imaging} |
+ nifticlib | 15 | {imaging} |
+ odin | 15 | {imaging-dev,imaging} |
+ minc-tools | 14 | {imaging} |
gnumed-server | 13 | {covid-19,practice} |
+ invesalius | 13 | {imaging} |
+ adun.app | 12 | {bio} |
+ dicomnifti | 12 | {imaging} |
+ insighttoolkit4 | 12 | {imaging-dev} |
+ ngs-sdk | 12 | {bio-dev} |
pixelmed | 12 | {imaging} |
- invesalius | 11 | {imaging} |
- mia | 11 | {imaging} |
- adun.app | 10 | {bio} |
- gdcm | 10 | {imaging-dev} |
- nifti2dicom | 10 | {imaging} |
- openslide | 10 | {imaging} |
- ngs-sdk | 9 | {bio-dev} |
- king | 8 | {imaging,typesetting} |
+ ngs-sdk | 10 | {bio-dev} |
+ orthanc-dicomweb | 9 | {covid-19,imaging} |
libminc | 8 | {imaging-dev} |
- ngs-sdk | 8 | {bio-dev} |
- plastimatch | 8 | {imaging} |
+ mia | 8 | {imaging} |
+ nifticlib | 8 | {imaging-dev} |
+ king | 7 | {imaging,typesetting} |
+ mrtrix3 | 7 | {imaging} |
+ ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
- nifticlib | 7 | {imaging-dev} |
- orthanc-dicomweb | 7 | {covid-19,imaging} |
+ orthanc-postgresql | 7 | {imaging} |
+ plastimatch | 7 | {imaging} |
+ biojava-live | 6 | {bio-dev} |
jebl2 | 6 | {bio-dev} |
- melting | 6 | {cloud,bio} |
- elastix | 5 | {imaging} |
+ libdivsufsort | 6 | {bio-dev} |
+ nifti2dicom | 6 | {imaging} |
+ orthanc-mysql | 6 | {imaging} |
+ jellyfish1 | 5 | {bio} |
+ lagan | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
- orthanc-postgresql | 5 | {imaging} |
- pymia | 5 | {imaging-dev} |
+ orthanc-gdcm | 5 | {imaging} |
+ oscar | 5 | {tools,data,practice} |
+ salmon | 5 | {bio,covid-19} |
+ treeview | 5 | {bio-phylogeny,bio} |
+ atropos | 4 | {bio} |
bart-view | 4 | {imaging} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- biojava-live | 4 | {bio-dev} |
- dicompyler | 4 | {oncology} |
embassy-domainatrix | 4 | {cloud,bio} |
- jellyfish1 | 4 | {bio} |
- lagan | 4 | {bio} |
- libsbml | 4 | {bio-dev} |
- nipype | 4 | {imaging-dev,imaging} |
- obitools | 4 | {bio} |
- orthanc-mysql | 4 | {imaging} |
- oscar | 4 | {tools,data,practice} |
+ libncl | 4 | {bio} |
+ openslide | 4 | {imaging-dev} |
+ orthanc-python | 4 | {covid-19} |
+ papyrus | 4 | {imaging-dev} |
phyutility | 4 | {bio,cloud} |
- rdp-alignment | 4 | {bio} |
- saint | 4 | {bio} |
- salmon | 4 | {bio,covid-19} |
- sibsim4 | 4 | {cloud,bio} |
- spread-phy | 4 | {bio,bio-phylogeny} |
+ piler | 4 | {bio} |
+ pymia | 4 | {imaging-dev} |
+ sight | 4 | {imaging} |
stacks | 4 | {bio} |
- treeview | 4 | {bio-phylogeny,bio} |
+ tracetuner | 4 | {bio} |
anfo | 3 | {bio,cloud} |
- bio-tradis | 3 | {bio-dev,bio} |
bitseq | 3 | {bio} |
- brig | 3 | {bio} |
- canu | 3 | {bio} |
+ cat-bat | 3 | {bio,covid-19} |
+ elastix | 3 | {imaging} |
embassy-domalign | 3 | {cloud,bio} |
embassy-domsearch | 3 | {bio,cloud} |
+ emboss-explorer | 3 | {bio} |
+ emmax | 3 | {bio} |
+ fastml | 3 | {bio} |
gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
- ipig | 3 | {bio} |
- lamarc | 3 | {bio} |
- libpal-java | 3 | {bio-dev} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
- mauve-aligner | 3 | {bio} |
- piler | 3 | {bio} |
- proalign | 3 | {bio,bio-phylogeny} |
- rdp-classifier | 3 | {bio} |
- sight | 3 | {imaging} |
- staden | 3 | {bio} |
- tracetuner | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
- arden | 2 | {cloud,bio} |
- assemblytics | 2 | {bio} |
- biomaj3-cli | 2 | {cloud} |
- cat-bat | 2 | {bio,covid-19} |
- clonalframeml | 2 | {covid-19,bio} |
+ ghmm | 3 | {bio} |
+ pbdagcon | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
+ saint | 3 | {bio} |
+ sibsim4 | 3 | {cloud,bio} |
+ sprai | 3 | {bio} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
+ bio-tradis | 2 | {bio-dev,bio} |
+ blimps | 2 | {bio} |
+ brig | 2 | {bio} |
clonalorigin | 2 | {bio} |
- delly | 2 | {bio,covid-19} |
dextractor | 2 | {bio,covid-19} |
- fastml | 2 | {bio} |
+ dicompyler | 2 | {oncology} |
fsm-lite | 2 | {bio} |
- ghmm | 2 | {bio} |
- hinge | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
+ gifticlib | 2 | {imaging-dev} |
+ ipig | 2 | {bio} |
+ lamarc | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
- libdivsufsort | 2 | {bio-dev} |
- libmuscle | 2 | {bio-dev} |
- libncl | 2 | {bio} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ libsbml | 2 | {bio-dev} |
+ mauve-aligner | 2 | {bio} |
+ melting | 2 | {cloud,bio} |
+ metaphlan2 | 2 | {bio} |
mhap | 2 | {bio,bio-ngs} |
- ngs-sdk | 2 | {bio-dev} |
- orthanc-gdcm | 2 | {imaging} |
- orthanc-python | 2 | {covid-19} |
- papyrus | 2 | {imaging-dev} |
- pbdagcon | 2 | {bio} |
+ microbegps | 2 | {bio} |
+ obitools | 2 | {bio} |
+ phast | 2 | {bio} |
+ placnet | 2 | {bio} |
+ plasmidid | 2 | {covid-19,bio} |
plasmidseeker | 2 | {bio} |
- pscan-chip | 2 | {bio} |
- qcumber | 2 | {bio} |
rambo-k | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
rtax | 2 | {cloud,bio} |
- runcircos-gui | 2 | {bio} |
sga | 2 | {bio} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
+ sift | 2 | {bio} |
+ spread-phy | 2 | {bio,bio-phylogeny} |
+ srf | 2 | {bio-dev} |
+ staden | 2 | {bio} |
suitename | 2 | {bio} |
- surankco | 2 | {bio} |
- trace2dbest | 2 | {bio} |
- tvc | 2 | {bio} |
- atropos | 1 | {bio} |
+ zalign | 2 | {cloud,bio} |
+ arden | 1 | {cloud,bio} |
+ assemblytics | 1 | {bio} |
bbmap | 1 | {bio,covid-19} |
- blimps | 1 | {bio} |
+ biomaj3-cli | 1 | {cloud} |
bustools | 1 | {bio,covid-19} |
- ctn | 1 | {imaging-dev} |
- cufflinks | 1 | {cloud,bio} |
- emboss-explorer | 1 | {bio} |
- emmax | 1 | {bio} |
+ canu | 1 | {bio} |
+ clonalframeml | 1 | {covid-19,bio} |
+ delly | 1 | {bio,covid-19} |
+ hinge | 1 | {bio} |
+ intake | 1 | {bio-dev,bio} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
kmerresistance | 1 | {bio} |
- libbpp-core | 1 | {bio-dev} |
- libbpp-phyl | 1 | {bio-dev} |
- libbpp-seq | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
- libgenome | 1 | {bio-dev} |
- libgkarrays | 1 | {bio-dev} |
libhmsbeagle | 1 | {bio-dev} |
- libmems | 1 | {bio-dev} |
- libseqlib | 1 | {bio-dev} |
- libstatgen | 1 | {bio-dev} |
+ libmuscle | 1 | {bio-dev} |
+ libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- metaphlan2 | 1 | {bio} |
- microbegps | 1 | {bio} |
- ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
- openslide | 1 | {imaging-dev} |
- pbseqlib | 1 | {bio-dev} |
- phast | 1 | {bio} |
+ pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
- placnet | 1 | {bio} |
pplacer | 1 | {bio-phylogeny,covid-19,bio} |
- shovill | 1 | {bio,covid-19} |
- sift | 1 | {bio} |
- simpleitk | 1 | {imaging-dev} |
+ proalign | 1 | {bio,bio-phylogeny} |
+ pscan-chip | 1 | {bio} |
+ python-wdlparse | 1 | {bio-dev} |
+ rdp-alignment | 1 | {bio} |
skesa | 1 | {bio} |
- sprai | 1 | {bio} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
+ spaln | 1 | {covid-19,bio} |
+ surankco | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
tophat-recondition | 1 | {bio,covid-19} |
+ tvc | 1 | {bio} |
varna | 1 | {bio} |
acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
@@ -162,55 +154,61 @@ Last-Update: Tue, 21 Sep 2021 01:42:04 +0000
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
+ ctn | 0 | {imaging-dev} |
+ cufflinks | 0 | {cloud,bio} |
eegdev | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
- gifticlib | 0 | {imaging-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
- intake | 0 | {bio-dev,bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
+ libbpp-core | 0 | {bio-dev} |
+ libbpp-phyl | 0 | {bio-dev} |
libbpp-phyl-omics | 0 | {bio-dev} |
libbpp-popgen | 0 | {bio-dev} |
libbpp-raa | 0 | {bio-dev} |
+ libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
+ libgenome | 0 | {bio-dev} |
+ libgkarrays | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {covid-19,bio-dev} |
+ libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
+ libseqlib | 0 | {bio-dev} |
+ libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
+ mssstest | 0 | {tools} |
+ ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- pigx-rnaseq | 0 | {covid-19,bio} |
- plasmidid | 0 | {covid-19,bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
- python-wdlparse | 0 | {bio-dev} |
+ qcumber | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
+ shovill | 0 | {bio,covid-19} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- simrisc | 0 | {oncology} |
smrtanalysis | 0 | {bio,covid-19} |
- spaln | 0 | {covid-19,bio} |
- srf | 0 | {bio-dev} |
+ trace2dbest | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
- mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
-(243 rows)
+(241 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/427b49fd625f23e4225f3f6ce61137bae15251af
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