[med-svn] [Git][med-team/metaphlan2][master] 16 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / metaphlan2


Commits:
c643de96 by Andreas Tille at 2021-09-22T16:50:31+02:00
routine-update: New upstream version

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c6e5e132 by Andreas Tille at 2021-09-22T16:50:32+02:00
New upstream version 3.0.13
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d998a2bf by Andreas Tille at 2021-09-22T16:50:34+02:00
Update upstream source from tag 'upstream/3.0.13'

Update to upstream version '3.0.13'
with Debian dir 5dc21e80bd5568a4e49f8f9f082d1ce64b1136d6
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062c7132 by Andreas Tille at 2021-09-22T16:50:34+02:00
routine-update: Standards-Version: 4.6.0

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6b53ffbc by Andreas Tille at 2021-09-22T16:50:34+02:00
routine-update: debhelper-compat 13

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90b8a51c by Andreas Tille at 2021-09-22T16:50:38+02:00
routine-update: Add salsa-ci file

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4f85a6a9 by Andreas Tille at 2021-09-22T16:50:38+02:00
routine-update: Rules-Requires-Root: no

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d3fb99b7 by Andreas Tille at 2021-09-22T16:50:39+02:00
Remove duplicate line from changelog.

Changes-By: lintian-brush

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881c01c6 by Andreas Tille at 2021-09-22T16:50:44+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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f1002544 by Andreas Tille at 2021-09-22T20:26:24+02:00
Cleanup changelog

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a0563bea by Andreas Tille at 2021-09-22T20:28:08+02:00
buildsystem=pybuild

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a299e596 by Andreas Tille at 2021-09-22T20:30:54+02:00
Drop patches

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5afdb145 by Andreas Tille at 2021-09-22T20:35:50+02:00
Build-Depends: python3-setuptools, python3-biopython

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b843360a by Andreas Tille at 2021-09-22T20:53:01+02:00
Do not try to install utils which was dropped upstream

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1bdd8317 by Andreas Tille at 2021-09-22T21:12:01+02:00
lintian-overrides for script-with-language-extension

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658b3469 by Andreas Tille at 2021-09-22T21:13:28+02:00
Upload to unstable

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30 changed files:

- + .github/ISSUE_TEMPLATE/bug_report.md
- + .github/no-response.yml
- + .github/workflows/main.yml
- + .github/workflows/python-publish.yml
- + .github/workflows/pythonpackage.yml
- − .gitignore
- .gitmodules
- README.md
- − _metaphlan2.py
- bioconda_recipe/meta.yaml
- debian/changelog
- debian/control
- debian/install
- + debian/lintian-overrides
- − debian/patches/_metaphlan2.py.patch
- − debian/patches/mpa_dir-is-usr_share_metaphlan2.patch
- − debian/patches/series
- − debian/patches/spelling.patch
- debian/rules
- + debian/salsa-ci.yml
- debian/upstream/metadata
- metaphlan/__init__.py
- metaphlan/metaphlan.py
- + metaphlan/metaphlan_databases/README.txt
- metaphlan/strainphlan.py
- + metaphlan/utils/calculate_unifrac.R
- metaphlan/utils/external_exec.py
- metaphlan/utils/extract_markers.py
- − metaphlan/utils/hclust2/README.md
- − metaphlan/utils/hclust2/__init__.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/metaphlan2/-/compare/d4fa22a6240934c441f48ed3aedddc902fde2cc9...658b3469f29b0d6a63643efcfbe3ca344e772ec7

-- 
View it on GitLab: https://salsa.debian.org/med-team/metaphlan2/-/compare/d4fa22a6240934c441f48ed3aedddc902fde2cc9...658b3469f29b0d6a63643efcfbe3ca344e772ec7
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