[med-svn] [Git][med-team/toil][master] 10 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
fc18dd26 by Michael R. Crusoe at 2021-09-29T17:31:01+02:00
routine-update: New upstream version

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033eb525 by Michael R. Crusoe at 2021-09-29T17:31:02+02:00
New upstream version 5.5.0
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9afc5602 by Michael R. Crusoe at 2021-09-29T17:31:08+02:00
Update upstream source from tag 'upstream/5.5.0'

Update to upstream version '5.5.0'
with Debian dir d5581870d1015c9a38efacb08415df1a8140a189
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fe54480b by Michael R. Crusoe at 2021-09-29T19:47:07+02:00
Refresh patches

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bb28fd33 by Michael R. Crusoe at 2021-09-29T19:47:07+02:00
Bump minimum version of cwltool needed to 3.1.20210922203925

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61c53f83 by Michael R. Crusoe at 2021-09-29T19:47:07+02:00
Testing: ignore src/toil/test/lib/aws/test_s3.py

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fb41ee36 by Michael R. Crusoe at 2021-09-29T19:47:08+02:00
Add testing dependency on python3-yaml.

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e27f61e2 by Michael R. Crusoe at 2021-09-29T19:47:08+02:00
debian/patches/spelling: fix some typos

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955cc96b by Michael R. Crusoe at 2021-09-29T19:47:08+02:00
debian/toil.lintian-overrides: documented another false positive

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5f459963 by Michael R. Crusoe at 2021-09-29T20:36:37+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- .github/PULL_REQUEST_TEMPLATE.md
- .gitignore
- .gitlab-ci.yml
- − .travis.yml
- contrib/admin/mypy-with-ignore.py
- + contrib/admin/wheel-of-issues
- + contrib/typeshed/dill/__init__.pyi
- + contrib/typeshed/dill/_dill.pyi
- debian/changelog
- debian/control
- debian/patches/no_galaxy_lib
- debian/patches/series
- debian/patches/setting_version.patch
- debian/patches/ship_tests
- debian/patches/soften-mesos-deps
- debian/patches/soften-pydocker-dep
- + debian/patches/spelling
- debian/patches/test_with_less_memory
- − debian/patches/version.patch
- debian/rules
- debian/tests/control
- debian/toil.lintian-overrides
- docs/appendices/environment_vars.rst
- docs/developingWorkflows/developing.rst
- docs/running/cliOptions.rst
- docs/running/cloud/clusterUtils.rst
- docs/running/cwl.rst
- requirements-dev.txt
- setup.py
- src/toil/batchSystems/abstractBatchSystem.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/d9dfe273744621900ca6f3c590f0bb89fc49152c...5f4599637a6819ce191fb6c437e2a75e2c9705c7

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View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/d9dfe273744621900ca6f3c590f0bb89fc49152c...5f4599637a6819ce191fb6c437e2a75e2c9705c7
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